PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009133154.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 352aa    MW: 39747.4 Da    PI: 8.6615
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009133154.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.31e-1614961198
                    HHTT-EE--HHH.HTT.---..--SEEEEEE..TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3 11 lksgrlvlpkkfaeeh.ggkkeesktltled..esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                    + s+ l++p  f+++h +g + +++t +l++   s ++Wevk   + ++ r  lt+GWkeF+ a++L++gD+++F+ +++++f  +v++f 
  XP_009133154.1 14 FHSH-LTIPVAFFSKHiQGRNDQKTTAKLTSdaASEKTWEVKT--EDGR-R--LTDGWKEFALAHDLRVGDILIFRQEKDMTF--HVTLFG 96
                    5555.************4455566667766644788*******..4444.3..9**********************5555555..999886 PP
2B369.54.4e-22145227894
                     -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
              B3   8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                     +++l+ + l lp +f++++g++++++ +++l++e+grsW++ l+ ++  gr ++++GW++F +angLk+gDf++Fkl++r ++  +v
  XP_009133154.1 145 PSTLRYDSLNLPMSFVRANGLETRCG-DIVLMNEKGRSWTLSLK-QRLCGRSYIARGWRSFFSANGLKAGDFFTFKLIKRGGT--LV 227
                     67788899*************99887.****************5.45555578999**********************97554..34 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.816398IPR003340B3 DNA binding domain
SuperFamilySSF1019361.67E-194105IPR015300DNA-binding pseudobarrel domain
CDDcd100173.36E-17495No hitNo description
Gene3DG3DSA:2.40.330.101.1E-236110IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.0E-19698IPR003340B3 DNA binding domain
PfamPF023625.9E-121595IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.7E-23131231IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-20132230IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086315.763138233IPR003340B3 DNA binding domain
CDDcd100171.79E-21138229No hitNo description
SMARTSM010191.1E-24139234IPR003340B3 DNA binding domain
PfamPF023621.4E-20143227IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MAKKHFFQPL LPGFHSHLTI PVAFFSKHIQ GRNDQKTTAK LTSDAASEKT WEVKTEDGRR  60
LTDGWKEFAL AHDLRVGDIL IFRQEKDMTF HVTLFGPSCC EIQYDSCLDD KNNIGKINSK  120
KNNPKREAEC SSSSDPSCFL ANVMPSTLRY DSLNLPMSFV RANGLETRCG DIVLMNEKGR  180
SWTLSLKQRL CGRSYIARGW RSFFSANGLK AGDFFTFKLI KRGGTLVLLH KSPSHREPKE  240
NEGSEADDEI ESLSTESDSD EESNQDEKSL IKRRISIWKA SSSPSQNSSV TLTLKPYNVI  300
KCVLVSFITQ KPILSFPFYC ANCVKTGESV KLKLIWEEDT SCVLKFCSKV KP
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009133154.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894330.0AC189433.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB068H20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013734122.10.0putative B3 domain-containing protein REM15 isoform X1
SwissprotO230765e-99REM15_ARATH; Putative B3 domain-containing protein REM15
TrEMBLM4E2550.0M4E255_BRARP; Uncharacterized protein
STRINGBra022855.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24645.13e-94B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]