PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009133086.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 187aa    MW: 20405.8 Da    PI: 4.5083
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009133086.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.66.6e-181464255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                     ykGVr++k++ +Wv+eIr+p     r   r++lg+f t+e+Aa a++ a+++l+g
  XP_009133086.1 14 LYKGVRQRKNSDKWVSEIREP-----RtpNRIWLGTFSTPEMAAIAYDVAALALKG 64
                    69******************9.....4478***********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.14E-281374No hitNo description
PfamPF008472.3E-111364IPR001471AP2/ERF domain
SMARTSM003805.3E-301478IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-191474IPR016177DNA-binding domain
PROSITE profilePS5103220.7191472IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.6E-271474IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MPGTSKENGG RHPLYKGVRQ RKNSDKWVSE IREPRTPNRI WLGTFSTPEM AAIAYDVAAL  60
ALKGTQTELN FPNSASSFPV PATMSPRDIQ AAAASAAAAF GAARDAIVMT NNNSATSSVE  120
RSNVMMMNGS YEDTYGFMDE DFIFDMPNML MNMAEGMLLS PPRQPTFDAA SDGYGYTGAD  180
DYLWSFP
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009133086.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009133086.11e-136PREDICTED: ethylene-responsive transcription factor ERF024
SwissprotQ9SJR02e-86ERF24_ARATH; Ethylene-responsive transcription factor ERF024
TrEMBLA0A078JXJ71e-135A0A078JXJ7_BRANA; BnaA03g56380D protein
TrEMBLM4E2R91e-135M4E2R9_BRARP; Uncharacterized protein
STRINGBra023070.1-P1e-136(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM64242546
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36450.17e-78ERF family protein