PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009133059.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

TALE

Protein Properties

Length: 658aa MW: 71747.2 Da PI: 6.755

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009133059.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	29.3	1.5e-09	379	416	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gLt +qV++WF N R + XP_009133059.1 379 FEHflHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVR 416 554459******************************88 PP
2	BELL	87.5	1.4e-28	248	302	1	55
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlk 55 erqe+q+kkakL s+l+eV++rY+qy++q+q+vissFe++ag+gsak+YtslAl XP_009133059.1 248 ERQEIQMKKAKLSSMLHEVEQRYRQYHQQMQMVISSFEQAAGIGSAKSYTSLALX 302 79***************************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	5.8E-57	168	307	IPR006563	POX domain
Pfam	PF07526	3.5E-36	174	301	IPR006563	POX domain
PROSITE profile	PS50071	12.26	357	420	IPR001356	Homeobox domain
SMART	SM00389	2.3E-9	360	424	IPR001356	Homeobox domain
CDD	cd00086	9.68E-13	360	421	No hit	No description
SuperFamily	SSF46689	5.56E-17	361	427	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	5.2E-29	363	426	IPR009057	Homeodomain-like
Pfam	PF05920	2.7E-18	377	416	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 658 aa Download sequence Send to blast
MAAYFHGNPP EISAGTDGGL QTLILMNPTT YVPYTQQDDD SNNSNNNTNN NNFVFLDSRA 60 PPQNANQQFV GIPLSGHEAA SITAADNISV LHGYPPRVQY SLYGSHQVDP THHQAACETP 120 RAQRGLSLTL SSQQQQQQHR QTLHHVGFGS GPGEDIRVGS GSTASGVTNG VANLVSSKYL 180 RAAQELLDEV VKADSNDITI KSQLFSSKKG TSVTDTKAVG ESSTGAREGS DGGGEASGKR 240 TVELGTAERQ EIQMKKAKLS SMLHEVEQRY RQYHQQMQMV ISSFEQAAGI GSAKSYTSLA 300 LXEAIAGQIK AANKSLGEED SVSGVGRFEG SRLKFVDHHL RQQRALQQLG MIQHPSNNAW 360 RPQRGLPERA VSVLRAWLFE HFLHPYPKDS DKHMLAKQTG LTRSQVSNWF INARVRLWKP 420 MVEEMYAEEM KEQGKNMGSM EKTPNLDENI DDSASKSTSN QEKIPMGGGG LDNYHLNPGH 480 NGELEGVTGM QESPKRLRTS DGTMMQPINE GFSSNEKMKI LEERQGIRSD GGYPFMGSFG 540 QYQMDEMSRF NVAVSDQELL TQRFSGNNNG VSLTLGLPHC DSLSSTHHQG FMQTHHGIQI 600 GRSVKIGETE EYGNSAINGG SGSAATAHSS AAAAAAYNGM NIQNQKRYVA QLLPDFVA

Sequence ? help Back to Top

Protein Sequence Length: 658 aa Download sequence Send to blast

MAAYFHGNPP EISAGTDGGL QTLILMNPTT YVPYTQQDDD SNNSNNNTNN NNFVFLDSRA  60
PPQNANQQFV GIPLSGHEAA SITAADNISV LHGYPPRVQY SLYGSHQVDP THHQAACETP  120
RAQRGLSLTL SSQQQQQQHR QTLHHVGFGS GPGEDIRVGS GSTASGVTNG VANLVSSKYL  180
RAAQELLDEV VKADSNDITI KSQLFSSKKG TSVTDTKAVG ESSTGAREGS DGGGEASGKR  240
TVELGTAERQ EIQMKKAKLS SMLHEVEQRY RQYHQQMQMV ISSFEQAAGI GSAKSYTSLA  300
LXEAIAGQIK AANKSLGEED SVSGVGRFEG SRLKFVDHHL RQQRALQQLG MIQHPSNNAW  360
RPQRGLPERA VSVLRAWLFE HFLHPYPKDS DKHMLAKQTG LTRSQVSNWF INARVRLWKP  420
MVEEMYAEEM KEQGKNMGSM EKTPNLDENI DDSASKSTSN QEKIPMGGGG LDNYHLNPGH  480
NGELEGVTGM QESPKRLRTS DGTMMQPINE GFSSNEKMKI LEERQGIRSD GGYPFMGSFG  540
QYQMDEMSRF NVAVSDQELL TQRFSGNNNG VSLTLGLPHC DSLSSTHHQG FMQTHHGIQI  600
GRSVKIGETE EYGNSAINGG SGSAATAHSS AAAAAAYNGM NIQNQKRYVA QLLPDFVA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4xrs_A	7e-17	366	423	1	58	Homeobox protein Meis1
4xrs_B	7e-17	366	423	1	58	Homeobox protein Meis1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bra.3742	0.0	leaf\| root

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009133059.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018513364.1	0.0	PREDICTED: LOW QUALITY PROTEIN: BEL1-like homeodomain protein 1
Swissprot	Q9SJ56	0.0	BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBL	A0A3P5ZIU1	0.0	A0A3P5ZIU1_BRACM; Uncharacterized protein
STRING	Bo3g029830.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5008	26	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35940.3	0.0	BEL1-like homeodomain 1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]