PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009132863.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

C3H

Protein Properties

Length: 1160aa MW: 129656 Da PI: 8.7178

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009132863.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24	6.8e-08	1070	1093	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++lCr + rtG C G++C+F H+ XP_009132863.1 1070 RRLCRSYVRTGSCAVGPSCSFDHP 1093 69*********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF52540	3.38E-38	35	301	IPR027417	P-loop containing nucleoside triphosphate hydrolase
Pfam	PF00931	5.5E-19	60	307	IPR002182	NB-ARC
Gene3D	G3DSA:3.40.50.300	1.2E-6	63	208	IPR027417	P-loop containing nucleoside triphosphate hydrolase
PRINTS	PR00364	1.7E-21	75	90	No hit	No description
PRINTS	PR00364	1.7E-21	151	165	No hit	No description
PRINTS	PR00364	1.7E-21	242	256	No hit	No description
SuperFamily	SSF46785	1.9E-6	278	382	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:3.40.50.300	1.4E-5	329	378	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SuperFamily	SSF52058	7.82E-33	403	645	IPR032675	Leucine-rich repeat domain, L domain-like
Gene3D	G3DSA:3.80.10.10	3.9E-27	407	645	IPR032675	Leucine-rich repeat domain, L domain-like
Pfam	PF07725	1.3E-8	465	484	IPR011713	Leucine-rich repeat 3
PRINTS	PR00364	1.7E-21	554	570	No hit	No description
SuperFamily	SSF52058	1.39E-19	579	658	IPR032675	Leucine-rich repeat domain, L domain-like
Gene3D	G3DSA:3.80.10.10	7.1E-13	705	810	IPR032675	Leucine-rich repeat domain, L domain-like
SuperFamily	SSF52058	1.39E-19	710	811	IPR032675	Leucine-rich repeat domain, L domain-like
PROSITE profile	PS50103	11.291	1067	1095	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.0E-5	1070	1093	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.1E-4	1071	1092	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007165	Biological Process	signal transduction
GO:0005515	Molecular Function	protein binding
GO:0043531	Molecular Function	ADP binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1160 aa Download sequence Send to blast
MASQVLKWRA AMIKLASIIG YAYKKGDEVI LAKNIVRDVC LPLSSETNMK LRGTRLSLKS 60 ILSLLNRSQP SSSQIVGLWG MAGIGKTTIT RDFFRSQAEQ YDVCYFLPDF HLLCQTKGLS 120 YLRDDFFSKI FGAEKVFVDA CDTKPSVTRD RFLGKKVLIV LDGVSSAKDA EVLVGGFGWF 180 SGGHTIILTS RNRQVLVQCN AKVIYEIEKL PKLESLHLCC KFASKENCKG RMSLTSELVD 240 YASGNPLALR VLGLSIQNQS MKDQKQHLRR LRQHPPVKIL NAFKISFNGR DDDEKSIFLD 300 LACFFRGEDR DRVVKILDGC GFSTDLGIYG LIDESLISLV DNKIEMPNIF QDAGRFVVCQ 360 EHEEPGNRSR LWDSSDIAGV LKNNTGTEAT EGIFLDASGL TFDLSSTAFE RMYRLRLLKI 420 HCPTSVNHCK VCLPEGLHSL PDELRLLHWE KYPLGSLPRN FNPKNLVELN MPYSNLTKVW 480 KGTKNLEKLK RIILSHSQQL TKFPRLSKAR NLEHIDLEGC TSLVKVNSSI LHHHKLTFLS 540 LRNCSRLRVM PTTVHLKSLE VLNLSGCSEL ENLQDFSLNL KEIYLAGAAI REIPSSIGDL 600 TRLVTLDLEN CESLQHLPPG ISNLKAMMTL KLSGCSNLKS LPVLDALFLQ DSQRSNTRIT 660 MEESVSINLH SAIQESSREA FLPAFEYLSN NGIPQESWTR VTVIPFPSPI LHSLASRLYA 720 LVSLFLCNAY LVDIPEDICW LASVMRLDLG GNSFSQIPKS IKEFRKLHSL NLRHCKNLKS 780 LPELPRSLVT LNAHGCVSLK SFPTSFEQFP RHFTFSNCFN LSPKVVREYI GKALDSVKGM 840 AKGILQASLE QEHINDPAFN ICIPASAGQQ SSVNFQAGSS VRIQLAPGML KTLSGFVLSV 900 VVEFWDNYSN TAGFGIKCIC RKSRIDLSPR LERIFHCWAP KEPITVHRDH MFVFGSVKMH 960 HAEAVNHDFL SDSVTFEFHP VNSENQLVDD SCTVKRCGVY LITDATSNTA LSAKRPSSSM 1020 DPGGLSSMEH VAPPYKKCRL KGVIEIVILS LRKRKRELSV PTVKNVSTVR RLCRSYVRTG 1080 SCAVGPSCSF DHPNWVLTHK TASSIPSESP PMDMLGLSSY GKPSDKRVET STEKPKRLSV 1140 SESRQATSGI DTIDAEQEEE

Sequence ? help Back to Top

Protein Sequence Length: 1160 aa Download sequence Send to blast

MASQVLKWRA AMIKLASIIG YAYKKGDEVI LAKNIVRDVC LPLSSETNMK LRGTRLSLKS  60
ILSLLNRSQP SSSQIVGLWG MAGIGKTTIT RDFFRSQAEQ YDVCYFLPDF HLLCQTKGLS  120
YLRDDFFSKI FGAEKVFVDA CDTKPSVTRD RFLGKKVLIV LDGVSSAKDA EVLVGGFGWF  180
SGGHTIILTS RNRQVLVQCN AKVIYEIEKL PKLESLHLCC KFASKENCKG RMSLTSELVD  240
YASGNPLALR VLGLSIQNQS MKDQKQHLRR LRQHPPVKIL NAFKISFNGR DDDEKSIFLD  300
LACFFRGEDR DRVVKILDGC GFSTDLGIYG LIDESLISLV DNKIEMPNIF QDAGRFVVCQ  360
EHEEPGNRSR LWDSSDIAGV LKNNTGTEAT EGIFLDASGL TFDLSSTAFE RMYRLRLLKI  420
HCPTSVNHCK VCLPEGLHSL PDELRLLHWE KYPLGSLPRN FNPKNLVELN MPYSNLTKVW  480
KGTKNLEKLK RIILSHSQQL TKFPRLSKAR NLEHIDLEGC TSLVKVNSSI LHHHKLTFLS  540
LRNCSRLRVM PTTVHLKSLE VLNLSGCSEL ENLQDFSLNL KEIYLAGAAI REIPSSIGDL  600
TRLVTLDLEN CESLQHLPPG ISNLKAMMTL KLSGCSNLKS LPVLDALFLQ DSQRSNTRIT  660
MEESVSINLH SAIQESSREA FLPAFEYLSN NGIPQESWTR VTVIPFPSPI LHSLASRLYA  720
LVSLFLCNAY LVDIPEDICW LASVMRLDLG GNSFSQIPKS IKEFRKLHSL NLRHCKNLKS  780
LPELPRSLVT LNAHGCVSLK SFPTSFEQFP RHFTFSNCFN LSPKVVREYI GKALDSVKGM  840
AKGILQASLE QEHINDPAFN ICIPASAGQQ SSVNFQAGSS VRIQLAPGML KTLSGFVLSV  900
VVEFWDNYSN TAGFGIKCIC RKSRIDLSPR LERIFHCWAP KEPITVHRDH MFVFGSVKMH  960
HAEAVNHDFL SDSVTFEFHP VNSENQLVDD SCTVKRCGVY LITDATSNTA LSAKRPSSSM  1020
DPGGLSSMEH VAPPYKKCRL KGVIEIVILS LRKRKRELSV PTVKNVSTVR RLCRSYVRTG  1080
SCAVGPSCSF DHPNWVLTHK TASSIPSESP PMDMLGLSSY GKPSDKRVET STEKPKRLSV  1140
SESRQATSGI DTIDAEQEEE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	992	996	TVKRC

Functional Description ? help Back to Top
Source	Description
UniProt	Disease resistance protein that cooperates with RPP2B to confer resistance to Hyaloperonospora parasitica isolate Cala2. {ECO:0000269\|PubMed:15165183}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009132863.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009132847.1	0.0	PREDICTED: disease resistance protein RRS1 isoform X1
Swissprot	F4JT78	0.0	RPP2A_ARATH; Disease resistance protein RPP2A
TrEMBL	M4DA90	0.0	M4DA90_BRARP; Uncharacterized protein
STRING	Bra013400.1-P	0.0	(Brassica rapa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45260.1	1e-169	Disease resistance protein (TIR-NBS-LRR class)

Publications ? help Back to Top
Meyers BC,Morgante M,Michelmore RW TIR-X and TIR-NBS proteins: two new families related to disease resistance TIR-NBS-LRR proteins encoded in Arabidopsis and other plant genomes. Plant J., 2002. 32(1): p. 77-92 [PMID:12366802] Sinapidou E, et al. Two TIR:NB:LRR genes are required to specify resistance to Peronospora parasitica isolate Cala2 in Arabidopsis. Plant J., 2004. 38(6): p. 898-909 [PMID:15165183] Kempema LA,Cui X,Holzer FM,Walling LL Arabidopsis transcriptome changes in response to phloem-feeding silverleaf whitefly nymphs. Similarities and distinctions in responses to aphids. Plant Physiol., 2007. 143(2): p. 849-65 [PMID:17189325]