PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_009132700.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | SBP | ||||||||
Protein Properties | Length: 342aa MW: 37435.4 Da PI: 8.1687 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 131.3 | 3.4e-41 | 104 | 181 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +C v+gC++d+s+++eyh+rhkvC+vhsk+pvv+++g +qrfCqqCsrfh l+efDe+k+sCr+rL++hn+rrrk+q+ XP_009132700.1 104 ICLVDGCDSDFSNCREYHKRHKVCDVHSKTPVVTINGNNQRFCQQCSRFHGLEEFDEGKKSCRKRLDGHNRRRRKPQP 181 5**************************************************************************987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 6.6E-32 | 97 | 166 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.505 | 102 | 179 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 2.35E-38 | 103 | 184 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 5.0E-30 | 105 | 178 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0048653 | Biological Process | anther development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 342 aa Download sequence Send to blast |
MDWNFKLSSG YFSEFDQESV PDLTPVDASI SFGGSSSPPR RLQPKGDLPF DLKLGRNIGH 60 SSSSSSSSAF GKTEKVISLS KLKESASEAS RSSKRTRGNN QIPICLVDGC DSDFSNCREY 120 HKRHKVCDVH SKTPVVTING NNQRFCQQCS RFHGLEEFDE GKKSCRKRLD GHNRRRRKPQ 180 PDHTDRTATF FQGSKLLDFS SSPHVFPTTS VVSPSWGSGP VSVAMANGSS YGQNQSYVGS 240 FPAKTGITFP ISSSPNSRGK QFPFLQEEED SSRMTSCIHD SDCALSLLSS SSSHLLQPQP 300 PLSLSQETVF YGSGLFENAS AVSDGSGNEA VPLPQTFPPF HW |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 2e-29 | 98 | 178 | 4 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 161 | 178 | KKSCRKRLDGHNRRRRKP |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Weak increase of expression during floral induction. {ECO:0000269|PubMed:14573523}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}. | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00555 | DAP | Transfer from AT5G50570 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_009132700.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156 and miR157. {ECO:0000305|PubMed:12202040}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009132698.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 13A | ||||
Refseq | XP_009132699.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 13A | ||||
Refseq | XP_009132700.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 13A | ||||
Swissprot | B9DI20 | 1e-163 | SP13A_ARATH; Squamosa promoter-binding-like protein 13A | ||||
Swissprot | P0DI11 | 1e-163 | SP13B_ARATH; Squamosa promoter-binding-like protein 13B | ||||
TrEMBL | M4E1W6 | 0.0 | M4E1W6_BRARP; Uncharacterized protein | ||||
STRING | Bra022766.1-P | 0.0 | (Brassica rapa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G50670.1 | 1e-141 | SBP family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|