PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009132652.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 507aa    MW: 55006.7 Da    PI: 6.7553
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009132652.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.00013200221223
                     EETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                      C++C++ F++  +L  H++tH
  XP_009132652.1 200 ICNICKRGFPNANSLGAHQKTH 221
                     6********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.889199226IPR007087Zinc finger, C2H2
PROSITE patternPS000280201223IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 507 aa     Download sequence    Send to blast
MSPSNSSSSP ETDQRLNDIV VAVQEKSTMT NPKQVSPREV VPEVNNPTQG SPQEVVPEVH  60
NPTQVSPQEI VPEVNNPKQV SPHPEVVPEV NNPKQVSPHQ EVVPEVNNQK QASPQEVVHE  120
MNNPKQVSPG EVVSQVNNPK QVSPQEVVPD PNNQKQGLPQ EVVPETESKK TQRASFELRV  180
LRAINKLIKK YPSLDNHSLI CNICKRGFPN ANSLGAHQKT HKHDLELERK LKQAEPIYSP  240
PGPGQCFWKK HDNSYQGTTS NALSNDKHLG ISRESIGGEG SSVRKMNIGE VMGYPSPPPY  300
GNTNYGFSSG APLVTHNYNR PNLSDFNRSG LSFGPFKPNG GGNYPYPPFT MNPSYGSHDS  360
KIMNSISQPN TLGSCSNNNN NNSSSQGAIS LELSLGPSKW RGGGNNNSSV YPSLNGGVTG  420
GGSMDLNTPV RPLVSRNHFY SNYPLDSFTS NVPPPPPPSP ATSLSNDENV PGSSLISKEK  480
NKAMVVDDDE KDNWETGGHD ADKPAQV
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009132652.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009132652.10.0PREDICTED: uncharacterized protein LOC103857225
TrEMBLM4EJR30.0M4EJR3_BRARP; Uncharacterized protein
STRINGBra029029.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1875167
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27880.13e-14C2H2 family protein