PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009132569.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 212aa    MW: 23204.9 Da    PI: 4.6325
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009132569.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.58e-1459108155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s ++G+r +  +g+Wv+eIr+p++   ++r++lg++  +e+Aa+a++ a ++l+g
  XP_009132569.1  59 SFFRGIRLR--NGKWVSEIREPRK---TTRIWLGTYPVPEMAAAAYDVASLALKG 108
                     5699**975..6*********843...5*********************999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.51E-1659116IPR016177DNA-binding domain
PROSITE profilePS5103218.59760116IPR001471AP2/ERF domain
SMARTSM003803.1E-2260122IPR001471AP2/ERF domain
PfamPF008471.2E-761108IPR001471AP2/ERF domain
CDDcd000181.05E-2561116No hitNo description
Gene3DG3DSA:3.30.730.103.0E-2361116IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MSNSSDSPTT GNKQTFNVPS IALPSKSSDQ SPQTSPGSSS SPSPSPARIT ATRTSGRHSF  60
FRGIRLRNGK WVSEIREPRK TTRIWLGTYP VPEMAAAAYD VASLALKGSE SVLNFPGLVL  120
SYVAPASNSA KDIRAAAARA AEMKQPGKEE EEEEEEALYS SLEFMDEEAM LNMPSLFTEM  180
AEGMLMSPPR MTDLWMDDSP ENHEGDCLWS YK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.58356e-89bud| leaf| root
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009132569.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2324390.0AC232439.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB003D07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009132569.11e-154PREDICTED: ethylene-responsive transcription factor ERF025-like
SwissprotQ9FJ902e-83ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLM4EK301e-153M4EK30_BRARP; Uncharacterized protein
STRINGBra029147.1-P1e-154(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM134571424
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.11e-74ERF family protein
Publications ? help Back to Top
  1. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]