PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009132543.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MYB | ||||||||
Protein Properties | Length: 267aa MW: 30998.8 Da PI: 9.0274 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 37.3 | 6.3e-12 | 17 | 64 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEd++l+ + G +W+t++ g+ R +k+c++rw +yl XP_009132543.1 17 KGLWSPEEDQKLKSFILSQGHACWTTVPILAGLQRNGKSCRLRWINYL 64 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 54.7 | 2.3e-17 | 70 | 115 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg +++eE+e ++ ++ lG++ W++Ia++++ gRt++++k++w++yl XP_009132543.1 70 RGTFSAEEEETILTLHSSLGNK-WSRIAKYLP-GRTDNEIKNYWHSYL 115 899*******************.*********.************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.633 | 12 | 64 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.34E-27 | 14 | 111 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.0E-7 | 16 | 66 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.1E-10 | 17 | 64 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.0E-19 | 18 | 71 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.58E-6 | 20 | 64 | No hit | No description |
PROSITE profile | PS51294 | 26.62 | 65 | 119 | IPR017930 | Myb domain |
SMART | SM00717 | 2.3E-16 | 69 | 117 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.3E-16 | 70 | 115 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.29E-11 | 72 | 115 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.8E-25 | 72 | 117 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 267 aa Download sequence Send to blast |
MGKMTKSGER PKQRQRKGLW SPEEDQKLKS FILSQGHACW TTVPILAGLQ RNGKSCRLRW 60 INYLRPGLKR GTFSAEEEET ILTLHSSLGN KWSRIAKYLP GRTDNEIKNY WHSYLKKGCL 120 KSQPQLKTQR SNLTESSSSP VSCGKRNPET LDHVISFQTL PEKPYSPQSQ GSNKNMMKSN 180 NMPKLFFSEW ITSSDPHVNY SSEFTDSLHI NQTQNRSEDE ELVMIKNSYS SLEDDVMFRT 240 EFQQPHHEYA NYYTSEDFFI NSDVTYM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-23 | 17 | 117 | 7 | 106 | B-MYB |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed at very low level. Expressed in cauline leaves. {ECO:0000269|PubMed:11581165}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that promotes photomorphogenesis in the light by participating in the transmission of phytochrome A (phyA) signals to downstream responses (PubMed:11581165, PubMed:19482971). Probably acts by activating expression of light-induced genes. In darkness, its degradation prevents the activation of light-induced genes (PubMed:11581165). {ECO:0000269|PubMed:11581165, ECO:0000269|PubMed:19482971}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009132543.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By hormones or elicitors treatment. By exposure to abiotic stress. {ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009132543.1 | 0.0 | PREDICTED: transcription factor LAF1 | ||||
Swissprot | Q9M0K4 | 5e-93 | LAF1_ARATH; Transcription factor LAF1 | ||||
TrEMBL | A0A3P6A5X1 | 0.0 | A0A3P6A5X1_BRACM; Uncharacterized protein | ||||
TrEMBL | M4EK12 | 0.0 | M4EK12_BRARP; Uncharacterized protein | ||||
STRING | Bra029129.1-P | 0.0 | (Brassica rapa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52260.1 | 1e-142 | myb domain protein 19 |
Publications ? help Back to Top | |||
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