PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009132543.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 267aa    MW: 30998.8 Da    PI: 9.0274
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009132543.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.36.3e-121764148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEd++l+  +   G  +W+t++   g+ R +k+c++rw +yl
   XP_009132543.1 17 KGLWSPEEDQKLKSFILSQGHACWTTVPILAGLQRNGKSCRLRWINYL 64
                     678*******************************************97 PP

2Myb_DNA-binding54.72.3e-1770115148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg +++eE+e ++ ++  lG++ W++Ia++++ gRt++++k++w++yl
   XP_009132543.1  70 RGTFSAEEEETILTLHSSLGNK-WSRIAKYLP-GRTDNEIKNYWHSYL 115
                      899*******************.*********.************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.6331264IPR017930Myb domain
SuperFamilySSF466897.34E-2714111IPR009057Homeodomain-like
SMARTSM007172.0E-71666IPR001005SANT/Myb domain
PfamPF002493.1E-101764IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.0E-191871IPR009057Homeodomain-like
CDDcd001675.58E-62064No hitNo description
PROSITE profilePS5129426.6265119IPR017930Myb domain
SMARTSM007172.3E-1669117IPR001005SANT/Myb domain
PfamPF002494.3E-1670115IPR001005SANT/Myb domain
CDDcd001672.29E-1172115No hitNo description
Gene3DG3DSA:1.10.10.601.8E-2572117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MGKMTKSGER PKQRQRKGLW SPEEDQKLKS FILSQGHACW TTVPILAGLQ RNGKSCRLRW  60
INYLRPGLKR GTFSAEEEET ILTLHSSLGN KWSRIAKYLP GRTDNEIKNY WHSYLKKGCL  120
KSQPQLKTQR SNLTESSSSP VSCGKRNPET LDHVISFQTL PEKPYSPQSQ GSNKNMMKSN  180
NMPKLFFSEW ITSSDPHVNY SSEFTDSLHI NQTQNRSEDE ELVMIKNSYS SLEDDVMFRT  240
EFQQPHHEYA NYYTSEDFFI NSDVTYM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-23171177106B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed at very low level. Expressed in cauline leaves. {ECO:0000269|PubMed:11581165}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes photomorphogenesis in the light by participating in the transmission of phytochrome A (phyA) signals to downstream responses (PubMed:11581165, PubMed:19482971). Probably acts by activating expression of light-induced genes. In darkness, its degradation prevents the activation of light-induced genes (PubMed:11581165). {ECO:0000269|PubMed:11581165, ECO:0000269|PubMed:19482971}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009132543.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By hormones or elicitors treatment. By exposure to abiotic stress. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009132543.10.0PREDICTED: transcription factor LAF1
SwissprotQ9M0K45e-93LAF1_ARATH; Transcription factor LAF1
TrEMBLA0A3P6A5X10.0A0A3P6A5X1_BRACM; Uncharacterized protein
TrEMBLM4EK120.0M4EK12_BRARP; Uncharacterized protein
STRINGBra029129.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52260.11e-142myb domain protein 19
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]