PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009132486.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 343aa    MW: 39014 Da    PI: 4.3292
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009132486.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.51.7e-18121170255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     +++GVr+++ +g W+AeIrdp +   ++r +lg+f taeeAa  +++a+ +l+g
  XP_009132486.1 121 KFRGVRQRP-WGEWAAEIRDPEQ---KRRLWLGTFETAEEAAVVYDNAAIRLRG 170
                     89*******.**********732...5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.107.6E-30120178IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-20121179IPR016177DNA-binding domain
SMARTSM003801.2E-37121184IPR001471AP2/ERF domain
PfamPF008472.8E-11121170IPR001471AP2/ERF domain
CDDcd000189.34E-33121177No hitNo description
PROSITE profilePS5103223.472121178IPR001471AP2/ERF domain
PRINTSPR003671.5E-9122133IPR001471AP2/ERF domain
PRINTSPR003671.5E-9144160IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MNMMDEELHE YMDFRPLKYS EHKTSVTKYT KASPETRPDS VRIVRVSVTD PYATDSSSDE  60
EEEDFLFPRR RVRRFVNEIK VEPGCNNTGV SMKERKRLSS PASNRHRPLK VSTSSGQNVR  120
KFRGVRQRPW GEWAAEIRDP EQKRRLWLGT FETAEEAAVV YDNAAIRLRG PDALTNFSVP  180
PQSKEESEPE QPVIDKPESN ITTTITTSST ESTEDFQHVS SPTSVLNLQS SSEEIQQPFK  240
SAKPEPEISD ASWCHTGFSS GSGESEDSFM LDSTFLDNYF NESTPEFSIL DQPMGQLFLE  300
NDVFSDTFLD EEIMMNIGDE FTKDIGSVFS EFDDSLMSDL LVV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-21120185470ATERF1
3gcc_A4e-21120185470ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009132486.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009132486.10.0PREDICTED: ethylene-responsive transcription factor CRF3-like
SwissprotQ9FK121e-133CRF3_ARATH; Ethylene-responsive transcription factor CRF3
TrEMBLM4EJW20.0M4EJW2_BRARP; Uncharacterized protein
STRINGBra029079.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22292576
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53290.11e-119cytokinin response factor 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Raines T, et al.
    The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis.
    Plant J., 2016. 85(1): p. 134-47
    [PMID:26662515]
  3. Jeon J,Cho C,Lee MR,Van Binh N,Kim J
    CYTOKININ RESPONSE FACTOR2 (CRF2) and CRF3 Regulate Lateral Root Development in Response to Cold Stress in Arabidopsis.
    Plant Cell, 2016. 28(8): p. 1828-43
    [PMID:27432872]