PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009132395.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MIKC_MADS
Protein Properties Length: 252aa    MW: 28778.4 Da    PI: 9.8087
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009132395.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.81.1e-312575151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyeys+
  XP_009132395.1 25 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSN 75
                    79***********************************************95 PP
2K-box107.61.5e-35921893100
           K-box   3 kssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                     +s++ s++e +a+++qqe+akL+++i ++q+++R+l+Ge ++s+s keL++Le +L++s+++iRskKnell+++i+++qk+e +l+++n+ Lr+k
  XP_009132395.1  92 NSNTGSVAEINAQYYQQESAKLRQQIISIQNSNRQLMGETIGSMSPKELRNLEGRLDRSVNRIRSKKNELLFAEIDYMQKREVDLHNDNQLLRAK 186
                     45555699*************************************************************************************** PP

           K-box  98 lee 100
                     ++e
  XP_009132395.1 187 IAE 189
                     986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.3191777IPR002100Transcription factor, MADS-box
SMARTSM004328.1E-411776IPR002100Transcription factor, MADS-box
CDDcd002659.76E-451891No hitNo description
SuperFamilySSF554553.01E-331890IPR002100Transcription factor, MADS-box
PRINTSPR004046.8E-331939IPR002100Transcription factor, MADS-box
PROSITE patternPS0035001973IPR002100Transcription factor, MADS-box
PfamPF003199.6E-272673IPR002100Transcription factor, MADS-box
PRINTSPR004046.8E-333954IPR002100Transcription factor, MADS-box
PRINTSPR004046.8E-335475IPR002100Transcription factor, MADS-box
PfamPF014863.2E-27102187IPR002487Transcription factor, K-box
PROSITE profilePS5129715.027103193IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0048440Biological Processcarpel development
GO:0048443Biological Processstamen development
GO:0048497Biological Processmaintenance of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MAYQMELGGE SSPQRKAGRG KIEIKRIENT TNRQVTFCKR RNGLLKKAYE LSVLCDAEVA  60
LIVFSSRGRL YEYSNNSVKG TIERYKKAIS DNSNTGSVAE INAQYYQQES AKLRQQIISI  120
QNSNRQLMGE TIGSMSPKEL RNLEGRLDRS VNRIRSKKNE LLFAEIDYMQ KREVDLHNDN  180
QLLRAKIAEN ERNNPSMSLM PGGSNYEQIM PPPQTQPQPF DSRNYFQVAA LQPNNHHYSS  240
AGREDQTALQ LV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1egw_A5e-201885168MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_B5e-201885168MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_C5e-201885168MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_D5e-201885168MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
3kov_A6e-201885168Myocyte-specific enhancer factor 2A
3kov_B6e-201885168Myocyte-specific enhancer factor 2A
3kov_I6e-201885168Myocyte-specific enhancer factor 2A
3kov_J6e-201885168Myocyte-specific enhancer factor 2A
3p57_A6e-201885168Myocyte-specific enhancer factor 2A
3p57_B6e-201885168Myocyte-specific enhancer factor 2A
3p57_C6e-201885168Myocyte-specific enhancer factor 2A
3p57_D6e-201885168Myocyte-specific enhancer factor 2A
3p57_I6e-201885168Myocyte-specific enhancer factor 2A
3p57_J6e-201885168Myocyte-specific enhancer factor 2A
6c9l_A7e-201885269Myocyte-specific enhancer factor 2B
6c9l_B7e-201885269Myocyte-specific enhancer factor 2B
6c9l_C7e-201885269Myocyte-specific enhancer factor 2B
6c9l_D7e-201885269Myocyte-specific enhancer factor 2B
6c9l_E7e-201885269Myocyte-specific enhancer factor 2B
6c9l_F7e-201885269Myocyte-specific enhancer factor 2B
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.154971e-132bud
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00609ChIP-seqTransfer from AT4G18960Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009132395.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBNABAG1X0.0M99415.1 Brassica napus (BAG1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001303060.10.0floral homeotic protein AGAMOUS
RefseqXP_009132380.10.0PREDICTED: floral homeotic protein AGAMOUS isoform X3
RefseqXP_009132395.10.0PREDICTED: floral homeotic protein AGAMOUS isoform X3
RefseqXP_013597287.10.0PREDICTED: floral homeotic protein AGAMOUS isoform X2
RefseqXP_013597293.10.0PREDICTED: floral homeotic protein AGAMOUS isoform X3
RefseqXP_013668951.10.0floral homeotic protein AGAMOUS isoform X1
RefseqXP_018512137.10.0PREDICTED: floral homeotic protein AGAMOUS isoform X2
SwissprotQ015400.0AG_BRANA; Floral homeotic protein AGAMOUS
TrEMBLA0A398AKC30.0A0A398AKC3_BRACM; Uncharacterized protein
TrEMBLM4DA540.0M4DA54_BRARP; Uncharacterized protein
STRINGBra013364.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.11e-160MIKC_MADS family protein