PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009132360.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

M-type_MADS

Protein Properties

Length: 274aa MW: 31458.9 Da PI: 8.2386

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009132360.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	53.9	2.3e-17	10	51	2	43
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 ri n+ r +t+ kR++ ++KKA+E S+LC+++ ++i++++t XP_009132360.1 10 RITNEKTRITTYRKRKECLFKKANEFSTLCGVNTCLIVYGPT 51 89**************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	4.0E-16	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	16.217	1	51	IPR002100	Transcription factor, MADS-box
CDD	cd00266	2.05E-25	2	82	No hit	No description
SuperFamily	SSF55455	4.45E-19	2	97	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.8E-7	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	9.2E-17	10	51	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.8E-7	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.8E-7	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence Send to blast
MGRKMVKMAR ITNEKTRITT YRKRKECLFK KANEFSTLCG VNTCLIVYGP TRAGDERIDH 60 PELWPKDERK VREIITKYRD TASSSCIKTY SVQECLEKSK IKLEKEKYCP WDNKLEKCSL 120 NELYATFVTV CNKIQEAANR KQTFPDASWS THRDQLGLIG YNQPCLEQHQ LFPMSSMEQN 180 GFAFLPFLNQ MTSTSNTGEV ASFSNVTEPE MTQAMFYGSC SDGQYAPMVQ KTDYMEPVQW 240 GLGNSMFSNV KPFADYPMRF GQVNDLESSG KTPM

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009132360.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189542	0.0	AC189542.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH004B20, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009132360.1	0.0	PREDICTED: agamous-like MADS-box protein AGL82
TrEMBL	A0A397ZU83	0.0	A0A397ZU83_BRACM; Uncharacterized protein
TrEMBL	M4EJJ9	0.0	M4EJJ9_BRARP; Uncharacterized protein
STRING	Bra028965.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5948	19	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G55690.1	1e-135	M-type_MADS family protein