PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009131673.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 422aa    MW: 44876 Da    PI: 7.3162
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009131673.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.15.2e-124267227
                    -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                    +++ C +++rtG C yG+rC+F+H+p
  XP_009131673.1 42 DEPDCVYYLRTGVCGYGSRCQFNHPP 67
                    6899********************97 PP
2zf-CCCH37.83.2e-1289113327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     ++ C++f+rtG+Ck+G++Ck++H++
  XP_009131673.1  89 QPVCQHFMRTGECKFGASCKYHHPR 113
                     589********************96 PP
3zf-CCCH40.83.7e-13138162226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     ++++C++++rtG+Ck+G++CkF+H+
  XP_009131673.1 138 GEKECPYYMRTGQCKFGSTCKFHHP 162
                     7899********************9 PP
4zf-CCCH36.67.4e-12283309127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     +++++C +f++tG Ck+G +C+++H++
  XP_009131673.1 283 PGQPECTYFMKTGDCKFGTSCRYHHPM 309
                     5789*********************95 PP
5zf-CCCH31.62.9e-10328354127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     ++t++C++fa+  +Ck G+ CkF H++
  XP_009131673.1 328 PGTAPCSHFAQHKICKLGPACKFDHSM 354
                     68***********************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.1924068IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-54067IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-84267IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.58E-64468IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.8E-64666IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.86386114IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-686113IPR000571Zinc finger, CCCH-type
SMARTSM003568.3E-787113IPR000571Zinc finger, CCCH-type
PfamPF006428.1E-1090113IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.4E-591113IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.854136164IPR000571Zinc finger, CCCH-type
SMARTSM003569.7E-7136163IPR000571Zinc finger, CCCH-type
PfamPF006426.7E-11138162IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-6139164IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.8E-5142161IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.065282310IPR000571Zinc finger, CCCH-type
SMARTSM003569.0E-6282309IPR000571Zinc finger, CCCH-type
PfamPF006426.4E-9284309IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.54E-6287310IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.7E-4288308IPR000571Zinc finger, CCCH-type
SMARTSM003563.4E-5327354IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.962327355IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-7328353IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-5328355IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MEPGEEGSRS DPGNETGIEV VASMSRLGLR GGGNESYPER PDEPDCVYYL RTGVCGYGSR  60
CQFNHPPNRP PVLGGLRAEA GEFPERMEQP VCQHFMRTGE CKFGASCKYH HPRQGGGGGD  120
SVTSPISFNH MGFPLRPGEK ECPYYMRTGQ CKFGSTCKFH HPVPPGDQVP SQQQLSTGPA  180
IYPPLQPQPS QQFGVVVPRP QILPGSYVQS PYGTYSQMVL PPGMVSYSGW NPYQPSVSAI  240
PSPGTQPSMG PSSVYGTTPL SPSAPAYQSG PSSNKEHSFP QQPGQPECTY FMKTGDCKFG  300
TSCRYHHPME AASPKGVALS NIGLPLRPGT APCSHFAQHK ICKLGPACKF DHSMTSSLND  360
QGTELHSSSS IKPTTTTSGG GSETTGAAGV SSSSSMTVGV SHSERTESKD GDSVSIEVKT  420
SS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.244891e-161silique
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009131673.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009131673.10.0PREDICTED: zinc finger CCCH domain-containing protein 58-like isoform X1
SwissprotQ6NPN30.0C3H58_ARATH; Zinc finger CCCH domain-containing protein 58
TrEMBLM4CQH60.0M4CQH6_BRARP; Uncharacterized protein
STRINGBra006465.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17792786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18550.10.0C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]