PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009131668.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 291aa    MW: 32563.4 Da    PI: 7.4095
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009131668.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.11.9e-173281255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                     ++GVr++  +g+WvAeIr+p   + r +r +lg+f t  +Aa a+++a+ kl+g
  XP_009131668.1 32 TFRGVRQRT-WGKWVAEIREP---N-RgTRLWLGTFNTSVQAAMAYDEAAMKLYG 81
                    69****999.**********8...3.35************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.12E-283187No hitNo description
Gene3DG3DSA:3.30.730.104.0E-293288IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-203288IPR016177DNA-binding domain
PROSITE profilePS5103220.7323289IPR001471AP2/ERF domain
SMARTSM003801.9E-333295IPR001471AP2/ERF domain
PRINTSPR003674.1E-93344IPR001471AP2/ERF domain
PfamPF008479.9E-133381IPR001471AP2/ERF domain
PRINTSPR003674.1E-95571IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MEEQPPAKKR NMGRSRKGCM KGKGGPENAT CTFRGVRQRT WGKWVAEIRE PNRGTRLWLG  60
TFNTSVQAAM AYDEAAMKLY GPEARLNLLQ PPQKQKQEVK RNLSFSDHGS GSWSYKLDTI  120
RGLDLGLGPS NGSRGSWSGS FSIPQEDDHP NVSWLLPKRS SSQDQESVND ASGLAFSNKM  180
QPRNLMMTPK HGSSNGVWSR FLVGQEKKTE YDVSSSCGSS DNKESILVPS VSGGEGMRRP  240
EVEVEVGTGY LEMDDLLEID DLGLLIGKDG DFKNWCCDEF QHPWNWFSER F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-153388359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. {ECO:0000250, ECO:0000269|PubMed:11798174}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009131668.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009131668.10.0PREDICTED: dehydration-responsive element-binding protein 2G-like
SwissprotP618271e-148DRE2G_ARATH; Dehydration-responsive element-binding protein 2G
TrEMBLM4CQH10.0M4CQH1_BRARP; Uncharacterized protein
STRINGBra006460.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM99782035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18450.11e-128ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]