PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009131667.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TCP
Protein Properties Length: 358aa    MW: 39219.7 Da    PI: 8.3134
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009131667.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP123.52.3e-38501792134
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaaksaa. 95 
                      g+kdrhsk+ T++g+RdRRvRls+++a +f+dLqd+LG+d++sk++eWL+++a+ +i el+++ ++++  +++++++++    + ++aa+++a 
  XP_009131667.1  50 SGGKDRHSKVWTSKGPRDRRVRLSVSTALQFYDLQDRLGLDQPSKAVEWLIKAAEDSISELPSL-NNTNFPMTDDENQNQ----TVTAAAAKSAc 139
                     689*************************************************************.334433333333322....33444444444 PP

             TCP  96 kskksqksaasalnlak.esrakarararertrekmrikn 134
                     +s++++++++s l+l++ e r kar+rarert+++ + ++
  XP_009131667.1 140 SSNSDTSKNSSGLSLSRsELRDKARERARERTAKETKERD 179
                     888888888889****99***************9988775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036348.2E-3451177IPR005333Transcription factor, TCP
PROSITE profilePS5136930.94252110IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137010.205157178IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MFPKTGDDVI IGDLMKTNNN GDVVDNNNNS NRLSRWHHNS SRIIRVSRAS GGKDRHSKVW  60
TSKGPRDRRV RLSVSTALQF YDLQDRLGLD QPSKAVEWLI KAAEDSISEL PSLNNTNFPM  120
TDDENQNQTV TAAAAKSACS SNSDTSKNSS GLSLSRSELR DKARERARER TAKETKERDH  180
TGSFTDLLNS GSDPVNVNRQ WMATSSSPAQ MEYLTSGLIL GSGQTHFPIQ TSAHPFSDHH  240
HHPQEFSFVP DHLISPAGSN GGGAFNLDFN MSSTTSAAGT AGFSGFNRGT LQSNSSNHHQ  300
QQSFLANLQR FSSSEGGGGP QFLFGALPAE NHHPNSHQFQ LYYENGCRNS DQKGKGKN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A8e-2357111155Putative transcription factor PCF6
5zkt_B8e-2357111155Putative transcription factor PCF6
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.40310.0bud| leaf
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: During flower development, first observed throughout the floral meristem. Later expressed in rapidly growing floral primordia. Detected to a lower extent in vegetative primordia. During flower development, first observed throughout the floral meristem. Expressed during ovule development (PubMed:25378179). {ECO:0000269|PubMed:10363373, ECO:0000269|PubMed:25378179}.
UniprotTISSUE SPECIFICITY: Expressed in cotyledons, particularly in the vascular region, in leaves, roots, buds, flowers and immature siliques. {ECO:0000269|PubMed:17307931}.
Functional Description ? help Back to Top
Source Description
UniProtPlays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). Participates in ovule develpment (PubMed:25378179). Promotes light-regulated transcription of CHS, CAB, HYH and HY5. Regulates positively photomorphogenesis (e.g. hypocotyl elongation inhibition and cotyledon opening in response to blue light) (PubMed:26596765). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179, ECO:0000269|PubMed:26596765}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009131667.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the miRNA miR-JAW (PubMed:12931144). Induced by blue light. Stabilized by light but labile in darkness due to proteasome-dependent proteolysis (at protein level) (PubMed:26596765). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:26596765}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3527970.0AK352797.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-07-O21.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009131675.10.0PREDICTED: transcription factor TCP2
RefseqXP_009131682.10.0PREDICTED: transcription factor TCP2
SwissprotQ93V430.0TCP2_ARATH; Transcription factor TCP2
TrEMBLA0A3P5Z3700.0A0A3P5Z370_BRACM; Uncharacterized protein
STRINGBo1g019520.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM76152539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.21e-129TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2
Publications ? help Back to Top
  1. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]
  2. Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C
    Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2018. 176(2): p. 1694-1708
    [PMID:29133375]