PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009131648.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | NAC | ||||||||
Protein Properties | Length: 336aa MW: 37943.9 Da PI: 6.5131 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 178.4 | 1.9e-55 | 21 | 148 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdee+++ yLk+kv ++++++ ++ e+d++k+ePwdLpk++k +eke yfF++rd+ky+tg r+nrat+sgyWkatgkdke+++ XP_009131648.1 21 LPPGFRFHPTDEEIISSYLKEKVLDSRFTA-VAMGEADLNKCEPWDLPKRAKMGEKEFYFFCQRDRKYPTGMRTNRATESGYWKATGKDKEIFKG 114 79*************************999.67***************99999*****************************************9 PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrle 129 kg lvg+kktLvfy+grap+gekt+Wvmheyrle XP_009131648.1 115 KGCLVGMKKTLVFYRGRAPRGEKTNWVMHEYRLE 148 ********************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.4E-61 | 18 | 173 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.054 | 21 | 172 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.2E-29 | 22 | 147 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 336 aa Download sequence Send to blast |
MAVVVESGVV LNHGGDELVD LPPGFRFHPT DEEIISSYLK EKVLDSRFTA VAMGEADLNK 60 CEPWDLPKRA KMGEKEFYFF CQRDRKYPTG MRTNRATESG YWKATGKDKE IFKGKGCLVG 120 MKKTLVFYRG RAPRGEKTNW VMHEYRLEGI YSYHNLPKTA RDDWVVCRVF HKNNPSTTTQ 180 QMTRIPMEDL ARTDSLENID HFLDFSSLPP LIDPSFTGQP NFKPINPPTY DISSPIQPHP 240 FNSSYQPIFN HQGFGSASGS GSGSTYNNNN KEMVKMEQSL VSVSQETCLS SDVNATTTAE 300 VSSGPVMKQE MSMMGMVNGS KSYEDLCDLR GILWDY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 6e-52 | 19 | 174 | 15 | 167 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 6e-52 | 19 | 174 | 15 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 6e-52 | 19 | 174 | 15 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 6e-52 | 19 | 174 | 15 | 167 | NO APICAL MERISTEM PROTEIN |
4dul_A | 6e-52 | 19 | 174 | 15 | 167 | NAC domain-containing protein 19 |
4dul_B | 6e-52 | 19 | 174 | 15 | 167 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009131648.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP641357 | 0.0 | KP641357.1 Brassica napus NAC transcription factor 87.1 (NAC87.1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009131648.1 | 0.0 | PREDICTED: NAC domain-containing protein 92-like | ||||
Swissprot | Q9FK44 | 0.0 | NAC87_ARATH; NAC domain-containing protein 87 | ||||
TrEMBL | A0A397ZUK5 | 0.0 | A0A397ZUK5_BRACM; Uncharacterized protein | ||||
TrEMBL | M4CQG0 | 0.0 | M4CQG0_BRARP; Uncharacterized protein | ||||
STRING | Bra006449.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2269 | 27 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18270.1 | 0.0 | Arabidopsis NAC domain containing protein 87 |
Publications ? help Back to Top | |||
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