PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009131559.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MYB | ||||||||
Protein Properties | Length: 335aa MW: 38054.4 Da PI: 5.8224 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58.7 | 1.3e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ede+l+d ++++G g+W++ ++ g++R++k+c++rw +yl XP_009131559.1 14 KGPWTQDEDEKLIDHIQKHGHGSWRALPKQAGLNRCGKSCRLRWTNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 58.4 | 1.6e-18 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+eE+e +++++ +lG++ W++Ia+ ++ gRt++++k++w+++l XP_009131559.1 67 RGNFTEEEEETIINLHSLLGNK-WSSIASNLP-GRTDNEIKNYWNTHL 112 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 9.1E-27 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.023 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.97E-32 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.6E-15 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.4E-17 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.23E-12 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 28.205 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.7E-28 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-17 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.3E-17 | 67 | 112 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 335 aa Download sequence Send to blast |
MGRSPCCDEN GLKKGPWTQD EDEKLIDHIQ KHGHGSWRAL PKQAGLNRCG KSCRLRWTNY 60 LRPDIKRGNF TEEEEETIIN LHSLLGNKWS SIASNLPGRT DNEIKNYWNT HLRKKLLQMG 120 IDPVTHRPRT DHLNVLAALP QLIAAANFNN LLNLNQNVQL DAATLAKAQL LHNMIQVLST 180 NNNNIPSSSP LTMQTNNNLF GQSSYLENQS LFGQPQNFSH IPGANHDEKM MVENQMIDQP 240 LDSFSSLMQM DVQDDHNSLP LLVAASPEES NQSQMMIKNK DIVHRHDTSN PSSSNSSFTQ 300 DHHQPWCDTI DDEAGDSYWK EIMEQTCSEP WPFPE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 5e-31 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Specifically and transiently expressed in root endodermal cells overlying the early stages of lateral root primordia formation. {ECO:0000269|PubMed:24902892, ECO:0000269|PubMed:25482809}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009131559.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009131558.1 | 0.0 | PREDICTED: transcription repressor MYB6-like isoform X1 | ||||
Refseq | XP_009131559.1 | 0.0 | PREDICTED: transcription repressor MYB6-like isoform X1 | ||||
Refseq | XP_009131560.1 | 0.0 | PREDICTED: transcription repressor MYB6-like isoform X1 | ||||
Refseq | XP_013729074.1 | 0.0 | transcription factor MYB41-like | ||||
Swissprot | Q9S9Z2 | 3e-88 | MYB93_ARATH; Transcription factor MYB93 | ||||
TrEMBL | M4CQ81 | 0.0 | M4CQ81_BRARP; Uncharacterized protein | ||||
STRING | Bra006370.1-P | 0.0 | (Brassica rapa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16770.2 | 1e-173 | myb domain protein 9 |
Publications ? help Back to Top | |||
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