PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009131441.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 484aa    MW: 52061.4 Da    PI: 7.6859
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009131441.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.95.6e-30167226159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     ++Dg++WrKYGqK  kg+++pr+YYrCt a gCpv+k+v+r+a+d +++++tYeg+H h+
  XP_009131441.1 167 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApGCPVRKQVQRCADDMSILITTYEGTHSHP 226
                     58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.0E-31152228IPR003657WRKY domain
SuperFamilySSF1182901.44E-27160228IPR003657WRKY domain
PROSITE profilePS5081128.69162228IPR003657WRKY domain
SMARTSM007749.3E-37167227IPR003657WRKY domain
PfamPF031063.9E-27168226IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006952Biological Processdefense response
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
MTEVKEENEK LKGMLERIES DYKSLKLRFF DIVQQEPSNN PTQDQNMVGL QKSTTDLSSF  60
DQEHELVSLS LGRRSSSSSD NTSKKEDKEV NADEELTKAG LTLGFSNGSL SSQENSSGET  120
WPSGKVTGKR SSPAPASCGD VEGEAGQQNN VKRARVCVRA RCDTPTMNDG CQWRKYGQKI  180
AKGNPCPRAY YRCTVAPGCP VRKQVQRCAD DMSILITTYE GTHSHPLPLS ATTMASTTSA  240
AASMLLSGSS SSSSSAAEMI GNNLYDNSRF INNNKSFYSP TLHSPLHPTV TLDLTTPQHS  300
SSSSLPSLNF NKYSNSFQNF PSTSLNFSSN PSLSSSTTLS IPAVWGSGYS SYTPYPYNNV  360
QFGTSNVGKT VQNSQSLTET LTKALTSDPS FQTVIAAAIS SMVGSNGEKQ IVNPISNNVQ  420
QTATTNNIKG CGGYFSSLLM SNIIANNQTG ASLDQPPSQP PLSMFKNSSS SSSTTSFVNK  480
EEKS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-21154228174WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009131441.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ0121710.0FJ012171.1 Brassica napus WRKY72 transcription factor (WRKY72) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009131440.10.0PREDICTED: probable WRKY transcription factor 72
SwissprotQ9LXG80.0WRK72_ARATH; Probable WRKY transcription factor 72
TrEMBLA0A3P6A2500.0A0A3P6A250_BRACM; Uncharacterized protein
TrEMBLM4CPZ40.0M4CPZ4_BRARP; Uncharacterized protein
STRINGBra006283.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.10.0WRKY DNA-binding protein 72