PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009131440.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 527aa    MW: 56744.7 Da    PI: 6.4065
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009131440.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.76.4e-30210269159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     ++Dg++WrKYGqK  kg+++pr+YYrCt a gCpv+k+v+r+a+d +++++tYeg+H h+
  XP_009131440.1 210 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApGCPVRKQVQRCADDMSILITTYEGTHSHP 269
                     58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-31195271IPR003657WRKY domain
SuperFamilySSF1182901.57E-27203271IPR003657WRKY domain
PROSITE profilePS5081128.69205271IPR003657WRKY domain
SMARTSM007749.3E-37210270IPR003657WRKY domain
PfamPF031064.3E-27211269IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006952Biological Processdefense response
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 527 aa     Download sequence    Send to blast
MEVLLKLPTS DSLLKDKFLG SAQILEASKG DDDHQELESA KAEMTEVKEE NEKLKGMLER  60
IESDYKSLKL RFFDIVQQEP SNNPTQDQNM VGLQKSTTDL SSFDQEHELV SLSLGRRSSS  120
SSDNTSKKED KEVNADEELT KAGLTLGFSN GSLSSQENSS GETWPSGKVT GKRSSPAPAS  180
CGDVEGEAGQ QNNVKRARVC VRARCDTPTM NDGCQWRKYG QKIAKGNPCP RAYYRCTVAP  240
GCPVRKQVQR CADDMSILIT TYEGTHSHPL PLSATTMAST TSAAASMLLS GSSSSSSSAA  300
EMIGNNLYDN SRFINNNKSF YSPTLHSPLH PTVTLDLTTP QHSSSSSLPS LNFNKYSNSF  360
QNFPSTSLNF SSNPSLSSST TLSIPAVWGS GYSSYTPYPY NNVQFGTSNV GKTVQNSQSL  420
TETLTKALTS DPSFQTVIAA AISSMVGSNG EKQIVNPISN NVQQTATTNN IKGCGGYFSS  480
LLMSNIIANN QTGASLDQPP SQPPLSMFKN SSSSSSTTSF VNKEEKS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-21197271174WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009131440.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ0121710.0FJ012171.1 Brassica napus WRKY72 transcription factor (WRKY72) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009131440.10.0PREDICTED: probable WRKY transcription factor 72
SwissprotQ9LXG80.0WRK72_ARATH; Probable WRKY transcription factor 72
TrEMBLA0A3P6A2500.0A0A3P6A250_BRACM; Uncharacterized protein
TrEMBLM4CPZ40.0M4CPZ4_BRARP; Uncharacterized protein
STRINGBra006283.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29592868
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.10.0WRKY DNA-binding protein 72