PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009131360.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MIKC_MADS
Protein Properties Length: 264aa    MW: 29995.1 Da    PI: 8.5901
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009131360.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF92.71.8e-29959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krien   rqvtfskRr+g+lKKA+ELSvLCdaevavi+fs++gkl+e+ss
  XP_009131360.1  9 KRIENANSRQVTFSKRRAGLLKKAHELSVLCDAEVAVIVFSKSGKLFEFSS 59
                    79***********************************************96 PP

2K-box84.52.3e-28791738100
           K-box   8 s..leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                        ++++++++ ++e++ Lk+ei++Lq+++ h++G+ L+ LslkeLq+Le+qL+ sl ++R++K+ ll++q+ee++ ke++++ en++Lr++++e
  XP_009131360.1  79 PgiNCKTENQEECTEVDLLKDEISMLQEKHLHMQGKRLNLLSLKELQHLEKQLNFSLISVRERKELLLTKQLEESRLKEQRAELENETLRRQVQE 173
                     34578999************************************************************************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.941161IPR002100Transcription factor, MADS-box
SMARTSM004323.6E-43160IPR002100Transcription factor, MADS-box
CDDcd002658.01E-45276No hitNo description
SuperFamilySSF554552.35E-32273IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-30323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.1E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-303859IPR002100Transcription factor, MADS-box
PfamPF014868.1E-1785171IPR002487Transcription factor, K-box
PROSITE profilePS5129712.89787177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010047Biological Processfruit dehiscence
GO:0010262Biological Processsomatic embryogenesis
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048577Biological Processnegative regulation of short-day photoperiodism, flowering
GO:0060862Biological Processnegative regulation of floral organ abscission
GO:0060867Biological Processfruit abscission
GO:0071365Biological Processcellular response to auxin stimulus
GO:2000692Biological Processnegative regulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MGRGKIEIKR IENANSRQVT FSKRRAGLLK KAHELSVLCD AEVAVIVFSK SGKLFEFSST  60
SMKKTLLRYG NYQISSDVPG INCKTENQEE CTEVDLLKDE ISMLQEKHLH MQGKRLNLLS  120
LKELQHLEKQ LNFSLISVRE RKELLLTKQL EESRLKEQRA ELENETLRRQ VQELRSFLPS  180
INQHYAPSYI RCFAIDPKNS LLSNTCLGDI NCSLQNTNSD TTLQLGLPGE AHDTRKNEGD  240
RESPSSDSVT TSTTRATAQR ISLV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A1e-24172172MEF2 CHIMERA
6byy_B1e-24172172MEF2 CHIMERA
6byy_C1e-24172172MEF2 CHIMERA
6byy_D1e-24172172MEF2 CHIMERA
6bz1_A2e-24172172MEF2 CHIMERA
6bz1_B2e-24172172MEF2 CHIMERA
6bz1_C2e-24172172MEF2 CHIMERA
6bz1_D2e-24172172MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00508DAPTransfer from AT5G13790Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009131360.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009131360.10.0PREDICTED: agamous-like MADS-box protein AGL15 isoform X2
RefseqXP_013738156.20.0agamous-like MADS-box protein AGL15 isoform X2
SwissprotQ392950.0AGL15_BRANA; Agamous-like MADS-box protein AGL15
TrEMBLM4CPS50.0M4CPS5_BRARP; Uncharacterized protein
STRINGBra006214.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13790.11e-127AGAMOUS-like 15