PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009131211.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 855aa    MW: 96032.1 Da    PI: 5.8397
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009131211.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.91.2e-183985148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg WT+eEde+l +av+ + g++Wk+Ia+++   Rt+ qc +rwqk+l
   XP_009131211.1 39 RGQWTAEEDEILRKAVHNFKGKNWKKIAEYFK-DRTDVQCLHRWQKVL 85
                     89*****************************9.************986 PP
2Myb_DNA-binding63.15.6e-2091137148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT+eEd+ +v++++++G++ W+tIar+++ gR +kqc++rw+++l
   XP_009131211.1  91 KGPWTKEEDDMIVQLIQKYGPKKWSTIARYLP-GRIGKQCRERWHNHL 137
                      79******************************.*************97 PP
3Myb_DNA-binding42.21.8e-13143185145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      + +WT+eE++ l++a++ +G++ W+   + ++ gR+++ +k++w+
   XP_009131211.1 143 KEAWTQEEELVLIRAHQVYGNR-WAELTKFLP-GRSDNGIKNHWH 185
                      579*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.3493485IPR017930Myb domain
SuperFamilySSF466891.58E-183799IPR009057Homeodomain-like
SMARTSM007172.9E-153887IPR001005SANT/Myb domain
PfamPF002491.6E-163985IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.7E-2441100IPR009057Homeodomain-like
CDDcd001671.41E-134285No hitNo description
PROSITE profilePS5129432.27486141IPR017930Myb domain
SuperFamilySSF466892.88E-3188184IPR009057Homeodomain-like
SMARTSM007174.9E-1990139IPR001005SANT/Myb domain
PfamPF002494.2E-1891137IPR001005SANT/Myb domain
CDDcd001672.63E-1693137No hitNo description
Gene3DG3DSA:1.10.10.606.0E-27101145IPR009057Homeodomain-like
PROSITE profilePS5129417.977142192IPR017930Myb domain
SMARTSM007174.0E-12142190IPR001005SANT/Myb domain
PfamPF002491.5E-11143185IPR001005SANT/Myb domain
CDDcd001673.19E-9145185No hitNo description
Gene3DG3DSA:1.10.10.601.2E-19146192IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 855 aa     Download sequence    Send to blast
MESECATTIS TPPPDGLTEG NPPKSRQGRT SGPTRRSTRG QWTAEEDEIL RKAVHNFKGK  60
NWKKIAEYFK DRTDVQCLHR WQKVLNPELV KGPWTKEEDD MIVQLIQKYG PKKWSTIARY  120
LPGRIGKQCR ERWHNHLNPA INKEAWTQEE ELVLIRAHQV YGNRWAELTK FLPGRSDNGI  180
KNHWHSSVKK KLDSYMSSGL LDQYQAMPLA PYERSSISLD CNGCVSGQAE KEVENCQISS  240
VAGCSISARD YQNGMINMEH HFHPCENYHK NEYYYPELEN ISVSISELSY DMEDCSQFPD  300
HNVSSQDYHF DFQELSDISL EMRHSMSELP MPYAKESKEA SLGGANSTSN RDVATYTNTA  360
NVSETECCRI LFVDQESEGL SVSRPSTQEP NEVSSTKSPM QSSSSKSIAT SASGKETLRP  420
APLIISPDKY SKKSSELICH PLEAEPNSMT SVNGTFITCA NNSSEEDQSY HLNDSKKLVP  480
VNDFASLAEV KPHSLPKHEP AEQQHHEDMG ASSSSLSFPS LDLPVFNSDL LQSKNDPLHD  540
YSPLGIRKLL MSTMTCMSPL RLWESPTGKK TLVGAKSILR KRTRDLLTPL SEKRSDKKLE  600
IDIAASLSKD FSRLDVMFDE SESREDSMSL EKPEQSCLDA SVKEKGVENV ESVSAVLCES  660
NTNKQVLSPP GQSVSKSEKA QVSTPRNHLH SSASLCLVIN SPSRARNTEG HHVDNETRNE  720
NFSIFCGTPF RRGLESPSAW KSPFYVNSLL HSPRFDTDIT IEDMGYIFSP GERSYGSIGL  780
MTQRDEHTSA FAAFDAMEVS LSASNYDDAR KMKELDKENN DPLLAERRVL DFNDCESPTK  840
VTEEPSSSYL LKGCR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C8e-69391926159MYB PROTO-ONCOGENE PROTEIN
1h89_C8e-69391926159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in the root quiescent center (PubMed:15937229). Accumulates in division zone of primary root tips and emerging lateral roots. Also present in floral organs in young flower buds. Weakly and uniformly present in the developing embryo and maternal tissues (PubMed:17287251). Expressed specifically in proliferating stage of leaves (PubMed:26069325). {ECO:0000269|PubMed:15937229, ECO:0000269|PubMed:17287251, ECO:0000269|PubMed:26069325}.
UniprotTISSUE SPECIFICITY: Expressed in roots, cotyledons and leaves, especially in vascular tissues, and in flowers. {ECO:0000269|PubMed:17287251}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds 5'-AACGG-3' motifs in gene promoters (PubMed:21862669). Involved in the regulation of cytokinesis, probably via the activation of several G2/M phase-specific genes transcription (e.g. KNOLLE) (PubMed:17287251, PubMed:21862669, PubMed:25806785). Required for the maintenance of diploidy (PubMed:21862669). {ECO:0000269|PubMed:17287251, ECO:0000269|PubMed:21862669, ECO:0000269|PubMed:25806785}.; FUNCTION: Involved in transcription regulation during induced endoreduplication at the powdery mildew (e.g. G.orontii) infection site, thus promoting G.orontii growth and reproduction. {ECO:0000269|PubMed:20018666}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009131211.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid (SA) (PubMed:16463103). Expressed in a cell cycle-dependent manner, with highest levels 2 hours before the peak of mitotic index in cells synchronized by aphidicolin. Activated by CYCB1 (PubMed:17287251). Accumulates at powdery mildew (e.g. G.orontii) infected cells. {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:17287251}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2324500.0AC232450.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB010H02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009131211.10.0PREDICTED: myb-related protein 3R-1-like
RefseqXP_013726176.10.0transcription factor MYB3R-4-like
SwissprotQ94FL90.0MB3R4_ARATH; Transcription factor MYB3R-4
TrEMBLA0A3P5ZF290.0A0A3P5ZF29_BRACM; Uncharacterized protein
STRINGBra006102.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM132131828
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11510.10.0myb domain protein 3r-4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Saito T, et al.
    Genetic interaction between G2/M phase-specific transcription factor MYB3R4 and MAPKKK ANP3 for execution of cytokinesis in Arabidopsis thaliana.
    Plant Signal Behav, 2015. 10(3): p. e990817
    [PMID:25806785]
  3. Kobayashi K, et al.
    Transcriptional repression by MYB3R proteins regulates plant organ growth.
    EMBO J., 2015. 34(15): p. 1992-2007
    [PMID:26069325]
  4. Chen P, et al.
    Arabidopsis R1R2R3-Myb proteins are essential for inhibiting cell division in response to DNA damage.
    Nat Commun, 2017. 8(1): p. 635
    [PMID:28935922]