PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009131190.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TALE
Protein Properties Length: 391aa    MW: 43624.2 Da    PI: 6.3435
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009131190.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.68.9e-083303632154
                     HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     k +yp++e++++L +++gL+ +q+ +WF N+R +
  XP_009131190.1 330 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 363
                     469*****************************87 PP
2ELK28.92.5e-10284305122
             ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                     ELKh+L+++Y+++++++++E++
  XP_009131190.1 284 ELKHELKQGYKEKIVDIREEIL 305
                     9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.0E-19118162IPR005540KNOX1
PfamPF037901.0E-17121161IPR005540KNOX1
SMARTSM012568.5E-28175230IPR005541KNOX2
PfamPF037912.0E-20180229IPR005541KNOX2
PROSITE profilePS512139.969284304IPR005539ELK domain
SMARTSM011886.1E-4284305IPR005539ELK domain
PfamPF037898.9E-7284305IPR005539ELK domain
PROSITE profilePS5007111.726304367IPR001356Homeobox domain
SMARTSM003892.4E-11306371IPR001356Homeobox domain
SuperFamilySSF466894.71E-16306371IPR009057Homeodomain-like
CDDcd000862.63E-11307368No hitNo description
Gene3DG3DSA:1.10.10.602.6E-25311368IPR009057Homeodomain-like
PfamPF059201.1E-17324363IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MAFHHNHFNH FTDQQHQPPL PPPPQQQEHH FHESTPPNWL LRSDNNFLNL HTPASAAATS  60
SDSPSADSPS PAAANQWLSR SSSFLQRGGG GANNNNVGSG DAMENVAGGE ESMIGENARH  120
KAEILSHPLY EQLLSAHVAC LRIATPVDQL PRIDAQLAQS QNVVAKYSTL DAASQGLISG  180
DDKELDHFMS HYVLLLCSFK EQLQQHVRVH AMEAVMACWE IEQSLQSFTG VSPGEGTGAT  240
MSEDEDEQVE SDAHLFDGSL DGLGFGPLVP TESERSLMER VRQELKHELK QGYKEKIVDI  300
REEILRKRRA GKLPGDTTSV LKAWWQSHSK WPYPTEEDKA RLVQETGLQL KQINNWFINQ  360
RKRNWHSNPS SSTASKNKRR SNAGENSGRE R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A2e-12307371872Homeobox protein PKNOX1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.204301e-102bud
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009131190.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3533380.0AK353338.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-40-P19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018512544.10.0PREDICTED: LOW QUALITY PROTEIN: homeobox protein knotted-1-like 4
SwissprotP480010.0KNAT4_ARATH; Homeobox protein knotted-1-like 4
TrEMBLA0A0D3B0K30.0A0A0D3B0K3_BRAOL; Uncharacterized protein
TrEMBLA0A3P6AKQ10.0A0A3P6AKQ1_BRAOL; Uncharacterized protein
STRINGBo3g006870.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44428158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11060.10.0KNOTTED1-like homeobox gene 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]