PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009131167.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family AP2
Protein Properties Length: 559aa    MW: 62831.9 Da    PI: 6.548
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009131167.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.86.2e-14257316155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +++Aa+a++ a++k+++
  XP_009131167.1 257 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqaRKgRQVYLGGYDKEDKAARAYDLAALKYWN 316
                     57*******************666664478446**********99************987 PP
2AP248.91.6e-15361410355
             AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     y+GV++++++grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  XP_009131167.1 361 YRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 410
                     9***************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.1E-16257325IPR016177DNA-binding domain
CDDcd000186.09E-20257326No hitNo description
PfamPF008477.8E-11257316IPR001471AP2/ERF domain
PROSITE profilePS5103218.597258324IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.6E-14258324IPR001471AP2/ERF domain
SMARTSM003802.3E-25258330IPR001471AP2/ERF domain
PRINTSPR003674.9E-6259270IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-17359419IPR016177DNA-binding domain
CDDcd000181.26E-10359418No hitNo description
Gene3DG3DSA:3.30.730.104.6E-18360418IPR001471AP2/ERF domain
PROSITE profilePS5103219.269360418IPR001471AP2/ERF domain
SMARTSM003803.3E-30360424IPR001471AP2/ERF domain
PfamPF008477.8E-10361410IPR001471AP2/ERF domain
PRINTSPR003674.9E-6400420IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 559 aa     Download sequence    Send to blast
MAPMTNWLTF SLSPMEMLRS SDQSQFVSYD ASSAASSPYL LDNFYGWTNQ KPQEEEEAQI  60
TASMADSTIL TSFVDSQNHS QNHIPKLEDF LGDFRYSDNS QTETQDSSSL THIYDPRHHQ  120
NQTGFYSDHS HDFKAMTGFQ TAFSTNSGSE VDDSVSMSRT HLAGEYLGHV VESSGQELGF  180
IHGGANTGGA LSLGVNTNNT NNQISEYNYR ANNNGERIIN NNNREKTDSE KEKPVVAVER  240
SDSSNKKVAD TFGQRTSIYR GVTRHRWTGR YEAHLWDNSC RREGQARKGR QVYLGGYDKE  300
DKAARAYDLA ALKYWNTAAT TNFPITNYSK ELEEMKHMTK QEFIASLRRK SSGFSRGASM  360
YRGVTRHHQQ GRWQARIGRV AGNKDLYLGT FATEEEAAEA YDIAAIKFRG INAVTNFEMN  420
RYDVEAIMKS ALPIGGAAKR LKLSLESEQK PIIGHHQLHH FQQQHQQLQS SPNDSSINFA  480
LCPSSDVQPQ MIPCGIPFEA ASLYHHQQQQ QQQNFFQHFP ANAASDSTDS NNNSNVQSSM  540
GLMAPNAAAE FFLWPNQSY
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.83141e-157root
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Detected in inflorescence and youg floral mersitems, and in stem procambial cells. In floral mersitems, mostly expressed in the central dome. Disappears progressively from sepal primordia, but accumulates in second, third and fourth whorl organ primordia. Later, confined to occasional patches in stamens and in petal before disparearing progressively from flowers. {ECO:0000269|PubMed:15988559}.
UniprotTISSUE SPECIFICITY: Expressed in roots, seedlings, hypocotyl, inflorescence, siliques, and pistils. Also detected at low levels in leaves. {ECO:0000269|PubMed:15988559, ECO:0000269|PubMed:16307362}.
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009131167.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009131167.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL6
SwissprotQ52QU20.0AIL6_ARATH; AP2-like ethylene-responsive transcription factor AIL6
TrEMBLM4CPC70.0M4CPC7_BRARP; Uncharacterized protein
STRINGBra006065.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33332765
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10510.20.0AINTEGUMENTA-like 6
Publications ? help Back to Top
  1. Krizek BA
    Intronic sequences are required for AINTEGUMENTA-LIKE6 expression in Arabidopsis flowers.
    BMC Res Notes, 2015. 8: p. 556
    [PMID:26459062]
  2. Yamaguchi N,Jeong CW,Nole-Wilson S,Krizek BA,Wagner D
    AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis.
    Plant Physiol., 2016. 170(1): p. 283-93
    [PMID:26537561]
  3. Krizek BA, et al.
    RNA-Seq Links the Transcription Factors AINTEGUMENTA and AINTEGUMENTA-LIKE6 to Cell Wall Remodeling and Plant Defense Pathways.
    Plant Physiol., 2016. 171(3): p. 2069-84
    [PMID:27208279]
  4. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]