PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009131150.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 339aa    MW: 38274.9 Da    PI: 6.6793
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009131150.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.43.8e-191461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEde+lv++++++G  +W++ +++ g++R++k+c++rw +yl
   XP_009131150.1 14 KGPWTPEEDEKLVNYIQKHGHSSWTALPKRAGLNRCGKSCRLRWTNYL 61
                     79********************************************97 PP

2Myb_DNA-binding52.79.7e-1767112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rgr+++eE++ ++++++  G++ W+tIa+ ++ gRt++++k++w+++l
   XP_009131150.1  67 RGRFSPEEEQTILNLHAVVGNK-WSTIANNLP-GRTDNEIKNFWNSHL 112
                      89********************.*********.************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-25564IPR009057Homeodomain-like
PROSITE profilePS5129418.349961IPR017930Myb domain
SuperFamilySSF466892.52E-3111108IPR009057Homeodomain-like
SMARTSM007177.6E-161363IPR001005SANT/Myb domain
PfamPF002497.4E-181461IPR001005SANT/Myb domain
CDDcd001677.19E-131661No hitNo description
PROSITE profilePS5129426.1162116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.7E-2765117IPR009057Homeodomain-like
SMARTSM007172.2E-1566114IPR001005SANT/Myb domain
PfamPF002496.3E-1567112IPR001005SANT/Myb domain
CDDcd001672.30E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MRRSPCSDDS GLKKGPWTPE EDEKLVNYIQ KHGHSSWTAL PKRAGLNRCG KSCRLRWTNY  60
LRPDIKRGRF SPEEEQTILN LHAVVGNKWS TIANNLPGRT DNEIKNFWNS HLKKKLIQMG  120
VDPMTHRPRP DIFSSLSQLV SMSSNLRGFV DMQLQFQTDQ EQTILKLQTE MAKLKLLHDL  180
LQPPSMNNNT NPNDFDTRSL LHSIASLKET YTTSNNPDLG PYLQDFSSIP SLETLNTNMV  240
PSSISPRDLE DSHFKFFSQR DNLPVSPVWL SDPSSSNQSL LPSLDHSSVV SGDLIRNQYI  300
IEDVNSNLMT SSSGQESGAS ASPVWPDHLL DDSIFSNIL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-30121165108B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in roots and at lower levels in stems, flowers and siliques. {ECO:0000269|PubMed:24902892}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250|UniProtKB:Q9M2D9}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00503DAPTransfer from AT5G10280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009131150.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1553420.0AC155342.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH052O08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009131150.10.0PREDICTED: transcription factor MYB39-like
RefseqXP_013681915.20.0transcription factor MYB41-like
SwissprotQ9SBF30.0MYB92_ARATH; Transcription factor MYB92
TrEMBLM4CPB70.0M4CPB7_BRARP; Uncharacterized protein
STRINGBra006055.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10280.11e-166myb domain protein 92
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]