PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009131005.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 330aa    MW: 37140.9 Da    PI: 4.5387
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009131005.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.65.3e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd++l+ + +++G g W+ I+++ g++R++k+c++rw +yl
   XP_009131005.1 14 KGAWTIEEDKKLISYLHEHGEGGWRDIPQKAGLKRCGKSCRLRWANYL 61
                     79********************************************97 PP
2Myb_DNA-binding45.32e-1467111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg ++ eE+++++ +++  G++ W+ Iar+++ +Rt++++k++w++ 
   XP_009131005.1  67 RGEFSYEEEQIIIMLHASRGNK-WSVIARHLP-KRTDNEIKNYWNTN 111
                      899*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.2E-23564IPR009057Homeodomain-like
PROSITE profilePS5129423.575965IPR017930Myb domain
SuperFamilySSF466891.68E-2811108IPR009057Homeodomain-like
SMARTSM007173.6E-121363IPR001005SANT/Myb domain
PfamPF002493.5E-161461IPR001005SANT/Myb domain
CDDcd001678.01E-101661No hitNo description
Gene3DG3DSA:1.10.10.607.1E-2465116IPR009057Homeodomain-like
SMARTSM007178.0E-1366114IPR001005SANT/Myb domain
PROSITE profilePS5129417.91966116IPR017930Myb domain
PfamPF002494.6E-1367112IPR001005SANT/Myb domain
CDDcd001679.20E-1069112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MSRKPCCVGE GLKKGAWTIE EDKKLISYLH EHGEGGWRDI PQKAGLKRCG KSCRLRWANY  60
LKPDIKRGEF SYEEEQIIIM LHASRGNKWS VIARHLPKRT DNEIKNYWNT NLRKRLIDQG  120
NDPLTHKPLA STPEPATPKT SDLQDDSNPS NLDEQYSHSG SMSPESLPLS SNSCNILEIS  180
NSDETPRNYG SFNSKKLSST SELLNKVATR AASMGNIISA SMEGTLIPST TLSPPCLNDG  240
LSETSHFQMD EFDIDMNFDF NNSEHDFSEF LEQFSNNAAE EADNIIGYDQ DLLFSDVSST  300
RVDEDGMTNI PGWSNYLLDD SEFSYDTNQD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C5e-25121162105C-Myb DNA-Binding Domain
1msf_C5e-25121162105C-Myb DNA-Binding Domain
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Primarily present around the midvein in seedlings. Accumulates gradually in expanding leaves, reaching a maximum in fully expanded leaves in the primary vein. {ECO:0000269|PubMed:18042203}.
UniprotTISSUE SPECIFICITY: Expressed in both vegetative and generative organs. Mostly present in seedlings, inflorescences, roots and stems, and, to a lower extent, in leaves (in midvein and trichomes) and siliques. {ECO:0000269|PubMed:18042203, ECO:0000269|PubMed:23115560, ECO:0000269|PubMed:9839469}.
Functional Description ? help Back to Top
Source Description
UniProtPlays a minor rheostat role in aliphatic glucosinolates (GLSs) biosynthesis, mostly short chained. Together with MYB28/HAG1 and MYB76/HAG2, promotes aliphatic glucosinolate biosynthesis but represses indolic glucosinolate biosynthesis. Prevents insect performance (e.g. lepidopteran insect Mamestra brassicae) by promoting glucosinolates. {ECO:0000269|PubMed:17420480, ECO:0000269|PubMed:18042203, ECO:0000269|PubMed:18446225, ECO:0000269|PubMed:20348214, ECO:0000269|PubMed:23580754, ECO:0000269|PubMed:23792303, ECO:0000269|PubMed:23943862}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009131005.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by gibberellic acid (GA), jasmonic acid (JA, MeJA), nitrogen starvation and UV LIGHT treatment. Transiently repressed by salicylic acid (SA). Accumulates upon mechanical stimuli (e.g. wounding) in inflorescence. Down-regulated by sulfur-deficient stress. {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:18042203, ECO:0000269|PubMed:23792303, ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX3160310.0JX316031.1 Brassica juncea R2R3 DNA binding transcription factor MYB29-1 (MYB29-1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009131005.10.0PREDICTED: transcription factor MYB29-like
RefseqXP_022566456.10.0transcription factor MYB29-like
SwissprotQ9FLR11e-155MYB29_ARATH; Transcription factor MYB29
TrEMBLA0A397ZR800.0A0A397ZR80_BRACM; Uncharacterized protein
TrEMBLC5HYG20.0C5HYG2_BRARP; MYB domain protein 29-1
TrEMBLS4TAZ20.0S4TAZ2_BRAJU; R2R3 DNA binding transcription factor MYB29-1
STRINGBra005949.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37871860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07690.11e-157myb domain protein 29
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Kim K,Jiang K,Teng SL,Feldman LJ,Huang H
    Using biologically interrelated experiments to identify pathway genes in Arabidopsis.
    Bioinformatics, 2012. 28(6): p. 815-22
    [PMID:22271267]
  3. Araki R, et al.
    Novel bioresources for studies of Brassica oleracea: identification of a kale MYB transcription factor responsible for glucosinolate production.
    Plant Biotechnol. J., 2013. 11(8): p. 1017-27
    [PMID:23910994]
  4. Guo R, et al.
    Jasmonic acid and glucose synergistically modulate the accumulation of glucosinolates in Arabidopsis thaliana.
    J. Exp. Bot., 2013. 64(18): p. 5707-19
    [PMID:24151308]
  5. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  6. Frerigmann H,Gigolashvili T
    Update on the role of R2R3-MYBs in the regulation of glucosinolates upon sulfur deficiency.
    Front Plant Sci, 2014. 5: p. 626
    [PMID:25426131]
  7. Burow M, et al.
    The Glucosinolate Biosynthetic Gene AOP2 Mediates Feed-back Regulation of Jasmonic Acid Signaling in Arabidopsis.
    Mol Plant, 2015. 8(8): p. 1201-12
    [PMID:25758208]
  8. Martínez-Ballesta M, et al.
    The impact of the absence of aliphatic glucosinolates on water transport under salt stress in Arabidopsis thaliana.
    Front Plant Sci, 2015. 6: p. 524
    [PMID:26236322]
  9. Bulgakov VP,Veremeichik GN,Grigorchuk VP,Rybin VG,Shkryl YN
    The rolB gene activates secondary metabolism in Arabidopsis calli via selective activation of genes encoding MYB and bHLH transcription factors.
    Plant Physiol. Biochem., 2016. 102: p. 70-9
    [PMID:26913794]
  10. Mostafa I, et al.
    New nodes and edges in the glucosinolate molecular network revealed by proteomics and metabolomics of Arabidopsis myb28/29 and cyp79B2/B3 glucosinolate mutants.
    J Proteomics, 2016. 138: p. 1-19
    [PMID:26915584]
  11. Smith JD,Woldemariam MG,Mescher MC,Jander G,De Moraes CM
    Glucosinolates from Host Plants Influence Growth of the Parasitic Plant Cuscuta gronovii and Its Susceptibility to Aphid Feeding.
    Plant Physiol., 2016. 172(1): p. 181-97
    [PMID:27482077]
  12. Zhang X, et al.
    The Transcription Factor MYB29 Is a Regulator of ALTERNATIVE OXIDASE1a.
    Plant Physiol., 2017. 173(3): p. 1824-1843
    [PMID:28167700]
  13. Mostafa I, et al.
    Membrane Proteomics of Arabidopsis Glucosinolate Mutants cyp79B2/B3 and myb28/29.
    Front Plant Sci, 2017. 8: p. 534
    [PMID:28443122]
  14. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]