PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_009130931.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 257aa MW: 29173 Da PI: 6.7958 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 103.7 | 1e-32 | 49 | 155 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f+k ltpsdv+k++rlv+pk++ae++ ++ +e+++ l++edesg+ W+++++y+++s++yvltkGW+++vk+++L+ D+v F+++++ XP_009130931.1 49 FEKSLTPSDVGKLNRLVIPKQHAEKYfplntiisNNAEEKGMLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKQLDPADVVFFQRQRS 143 99*******************************9888899***************************************************9988 PP SEE..EEEEE-S CS B3 88 sefelvvkvfrk 99 ++++l+++++r+ XP_009130931.1 144 DSRRLFIGWRRR 155 9999******97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.0E-39 | 43 | 163 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.22E-29 | 44 | 155 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 9.80E-27 | 48 | 146 | No hit | No description |
SMART | SM01019 | 1.3E-22 | 49 | 156 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.8E-30 | 49 | 155 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.535 | 49 | 156 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 257 aa Download sequence Send to blast |
MSVNHYSTDH HQVHHHHTLF LQNLHTTDTS EPTTTAATSL REDQKEYLFE KSLTPSDVGK 60 LNRLVIPKQH AEKYFPLNTI ISNNAEEKGM LLSFEDESGK CWRFRYSYWN SSQSYVLTKG 120 WSRYVKDKQL DPADVVFFQR QRSDSRRLFI GWRRRGQGSS SAANTTSYSS SMTAPPYSNY 180 SNRPAHSEYS HYGAAVATAT ETHFIPSSSA VGSSRTVRLF GVNLECQMDE DEGDDSVATA 240 AAAECPRQDS YYDQNII |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 3e-50 | 45 | 155 | 4 | 113 | B3 domain-containing transcription factor NGA1 |
5os9_B | 3e-50 | 45 | 155 | 4 | 113 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_009130931.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AB006700 | 2e-77 | AB006700.2 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MHF15. | |||
GenBank | CP002688 | 2e-77 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009130931.1 | 0.0 | PREDICTED: B3 domain-containing protein At5g06250-like isoform X4 | ||||
Swissprot | Q9FNI3 | 1e-121 | Y5625_ARATH; B3 domain-containing protein At5g06250 | ||||
TrEMBL | A0A078I8L8 | 0.0 | A0A078I8L8_BRANA; BnaA02g29460D protein | ||||
TrEMBL | M4CNU8 | 0.0 | M4CNU8_BRARP; Uncharacterized protein | ||||
STRING | Bra005886.1-P | 0.0 | (Brassica rapa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G06250.2 | 1e-114 | B3 family protein |