PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009130929.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 267aa    MW: 30349.2 Da    PI: 6.8446
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009130929.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3103.51.1e-3249155199
                     EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                     f+k ltpsdv+k++rlv+pk++ae++        ++ +e+++ l++edesg+ W+++++y+++s++yvltkGW+++vk+++L+  D+v F+++++
  XP_009130929.1  49 FEKSLTPSDVGKLNRLVIPKQHAEKYfplntiisNNAEEKGMLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKQLDPADVVFFQRQRS 143
                     99*******************************9888899***************************************************9988 PP

                     SEE..EEEEE-S CS
              B3  88 sefelvvkvfrk 99 
                     ++++l+++++r+
  XP_009130929.1 144 DSRRLFIGWRRR 155
                     9999******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-3943163IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-2944155IPR015300DNA-binding pseudobarrel domain
CDDcd100171.15E-2648146No hitNo description
SMARTSM010191.3E-2249156IPR003340B3 DNA binding domain
PROSITE profilePS5086313.53549156IPR003340B3 DNA binding domain
PfamPF023626.4E-3049155IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MSVNHYSTDH HQVHHHHTLF LQNLHTTDTS EPTTTAATSL REDQKEYLFE KSLTPSDVGK  60
LNRLVIPKQH AEKYFPLNTI ISNNAEEKGM LLSFEDESGK CWRFRYSYWN SSQSYVLTKG  120
WSRYVKDKQL DPADVVFFQR QRSDSRRLFI GWRRRGQGSS SAANTTSYSS SMTAPPYSNY  180
SNRPAHSEYS HYGAAVATAT ETHFIPSSSA VGSSRTVRLF GVNLECQMDE DEGDDSVATA  240
AAAECPRQDS YYDQNMYNYY TPHSSAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A3e-50451554113B3 domain-containing transcription factor NGA1
5os9_B3e-50451554113B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009130929.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0067002e-77AB006700.2 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MHF15.
GenBankCP0026882e-77CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009130927.10.0PREDICTED: B3 domain-containing protein At5g06250-like isoform X2
RefseqXP_009130928.10.0PREDICTED: B3 domain-containing protein At5g06250-like isoform X2
RefseqXP_009130929.10.0PREDICTED: B3 domain-containing protein At5g06250-like isoform X2
RefseqXP_013723834.10.0B3 domain-containing protein At5g06250
RefseqXP_013723840.10.0B3 domain-containing protein At5g06250
SwissprotQ9FNI31e-122Y5625_ARATH; B3 domain-containing protein At5g06250
TrEMBLA0A078I8L80.0A0A078I8L8_BRANA; BnaA02g29460D protein
TrEMBLM4CNU80.0M4CNU8_BRARP; Uncharacterized protein
STRINGBra005886.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06250.21e-114B3 family protein