PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009130927.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | B3 | ||||||||
Protein Properties | Length: 267aa MW: 30349.2 Da PI: 6.8446 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 103.5 | 1.1e-32 | 49 | 155 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f+k ltpsdv+k++rlv+pk++ae++ ++ +e+++ l++edesg+ W+++++y+++s++yvltkGW+++vk+++L+ D+v F+++++ XP_009130927.1 49 FEKSLTPSDVGKLNRLVIPKQHAEKYfplntiisNNAEEKGMLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKQLDPADVVFFQRQRS 143 99*******************************9888899***************************************************9988 PP SEE..EEEEE-S CS B3 88 sefelvvkvfrk 99 ++++l+++++r+ XP_009130927.1 144 DSRRLFIGWRRR 155 9999******97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.1E-39 | 43 | 163 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.35E-29 | 44 | 155 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.15E-26 | 48 | 146 | No hit | No description |
SMART | SM01019 | 1.3E-22 | 49 | 156 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.535 | 49 | 156 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.4E-30 | 49 | 155 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 267 aa Download sequence Send to blast |
MSVNHYSTDH HQVHHHHTLF LQNLHTTDTS EPTTTAATSL REDQKEYLFE KSLTPSDVGK 60 LNRLVIPKQH AEKYFPLNTI ISNNAEEKGM LLSFEDESGK CWRFRYSYWN SSQSYVLTKG 120 WSRYVKDKQL DPADVVFFQR QRSDSRRLFI GWRRRGQGSS SAANTTSYSS SMTAPPYSNY 180 SNRPAHSEYS HYGAAVATAT ETHFIPSSSA VGSSRTVRLF GVNLECQMDE DEGDDSVATA 240 AAAECPRQDS YYDQNMYNYY TPHSSAS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 3e-50 | 45 | 155 | 4 | 113 | B3 domain-containing transcription factor NGA1 |
5os9_B | 3e-50 | 45 | 155 | 4 | 113 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009130927.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB006700 | 2e-77 | AB006700.2 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MHF15. | |||
GenBank | CP002688 | 2e-77 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009130927.1 | 0.0 | PREDICTED: B3 domain-containing protein At5g06250-like isoform X2 | ||||
Refseq | XP_009130928.1 | 0.0 | PREDICTED: B3 domain-containing protein At5g06250-like isoform X2 | ||||
Refseq | XP_009130929.1 | 0.0 | PREDICTED: B3 domain-containing protein At5g06250-like isoform X2 | ||||
Refseq | XP_013723834.1 | 0.0 | B3 domain-containing protein At5g06250 | ||||
Refseq | XP_013723840.1 | 0.0 | B3 domain-containing protein At5g06250 | ||||
Swissprot | Q9FNI3 | 1e-122 | Y5625_ARATH; B3 domain-containing protein At5g06250 | ||||
TrEMBL | A0A078I8L8 | 0.0 | A0A078I8L8_BRANA; BnaA02g29460D protein | ||||
TrEMBL | M4CNU8 | 0.0 | M4CNU8_BRARP; Uncharacterized protein | ||||
STRING | Bra005886.1-P | 0.0 | (Brassica rapa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06250.2 | 1e-114 | B3 family protein |