PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009130900.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family G2-like
Protein Properties Length: 312aa    MW: 36107.2 Da    PI: 7.4045
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009130900.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.51.2e-31155208255
         G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     pr+rWt++LH++Fv+av+ LGG+e+AtPk++lelm+v++Ltl+hvkSHLQ+YR+
  XP_009130900.1 155 PRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMDVQDLTLAHVKSHLQMYRT 208
                     9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.84E-15152209IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-27153209IPR009057Homeodomain-like
TIGRFAMsTIGR015572.9E-23155209IPR006447Myb domain, plants
PfamPF002499.3E-7156207IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MELFPSQPDL YLKINRRREE QEEEDYKEQE EVQRRLLFGS KASDSDRKAS DHHIHTLQFT  60
SNNEPTKIDH NQEHMESLHQ DLRSNFMVKP IRGIPLHQNQ ILDHYYYSPT PPFFFSEVNG  120
QHTNPSYSYN LHHRHHRQAQ PQAQRLTAKR GVRAPRMRWT TTLHAHFVHA VQLLGGHERA  180
TPKSVLELMD VQDLTLAHVK SHLQMYRTIK STEKPTTSSD IGQSDTCENE LKLNSERQAR  240
DLQGLWSNSS SEARFHLKAK ASGLDMSSNK NVDQRCPSYE RLSSDSSSLT GTRPEIETPN  300
LEFTLAIPNL LP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A7e-16156210458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B7e-16156210458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A7e-16156210458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C7e-16156210458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D7e-16156210458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F7e-16156210458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H7e-16156210458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J7e-16156210458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in developing phloem. {ECO:0000269|PubMed:14561401}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates lateral organ polarity. Plays a role in lateral root formation and development. {ECO:0000269|PubMed:15286295, ECO:0000269|PubMed:17307928}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009130900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1834920.0AC183492.1 Brassica oleracea Contig G, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009130900.10.0PREDICTED: probable transcription factor KAN3
SwissprotQ941I21e-162KAN3_ARATH; Probable transcription factor KAN3
TrEMBLA0A3P5Z6D00.0A0A3P5Z6D0_BRACM; Uncharacterized protein
STRINGBra040176.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM139841825
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17695.11e-141G2-like family protein