PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009130655.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ERF | ||||||||
Protein Properties | Length: 312aa MW: 35424.4 Da PI: 5.989 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.1 | 5.9e-20 | 171 | 222 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+GVr ++ +g+++AeIrdp+ +g +r++lg+f+ta eAa+a+++a+ +l+g+ XP_009130655.1 171 HYRGVRMRP-WGKFAAEIRDPTRRG--TRVWLGTFDTAIEAARAYDQAAFRLRGA 222 7********.**********97665..**************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 6.6E-32 | 170 | 230 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.4E-34 | 171 | 235 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.39E-30 | 171 | 229 | No hit | No description |
SuperFamily | SSF54171 | 2.09E-22 | 171 | 231 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.881 | 171 | 229 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.7E-14 | 171 | 221 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.9E-10 | 172 | 183 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.9E-10 | 195 | 211 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000302 | Biological Process | response to reactive oxygen species | ||||
GO:0001944 | Biological Process | vasculature development | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009644 | Biological Process | response to high light intensity | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 312 aa Download sequence Send to blast |
MLPWKVSLID LRLFLPIYIH FHTLLYCQIE SFLLSINHLP PILCSLMATP SETSALFFIK 60 KYLLDELSPL PNATTTNPWE TSSDFSFFGS FDQTGFDFPE FETKPEITDT PLAPNDSFTF 120 QSNPPVVSQS NRKPPLKIAP PNRSEWIQFA AGKPQREQVP LPQVAAEEKR HYRGVRMRPW 180 GKFAAEIRDP TRRGTRVWLG TFDTAIEAAR AYDQAAFRLR GAKAIVNFPL EVGMWEPRAE 240 NGQNKRKRDG AEEEETRVVA KVVKTEESHG VEQVTSSLTG VDDWDLTEFL SMPLFSPLSP 300 HPPFGYPQLT VV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-28 | 170 | 236 | 4 | 70 | ATERF1 |
3gcc_A | 2e-28 | 170 | 236 | 4 | 70 | ATERF1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bra.17282 | 0.0 | root |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:9756931}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00437 | DAP | Transfer from AT4G17490 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009130655.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009130655.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor 6-like | ||||
Swissprot | Q8VZ91 | 1e-129 | EF103_ARATH; Ethylene-responsive transcription factor 6 | ||||
TrEMBL | A0A398AM08 | 0.0 | A0A398AM08_BRACM; Uncharacterized protein | ||||
STRING | Bra040158.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17490.1 | 1e-106 | ethylene responsive element binding factor 6 |