PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009130624.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 228aa    MW: 25749.8 Da    PI: 7.5013
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009130624.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.10.000587395123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    + C+ C k Fs++  L  H++ H
  XP_009130624.1 73 FGCTFCEKEFSTSQALGGHQNAH 95
                    56******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.35E-670100No hitNo description
Gene3DG3DSA:3.30.160.604.2E-57099IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139122.3E-57297IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.44873100IPR007087Zinc finger, C2H2
PROSITE patternPS0002807595IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MELNLTTSCS SNSISSSSNE MGFSTDSKGK MKEKIAIEPE FRFLLNKDSI RNSSFGVLEE  60
AEGMKNEAKA RVFGCTFCEK EFSTSQALGG HQNAHKQERS LAKRHKEMDM NDPGLSFYSQ  120
YPPSGDFFSS SNRSQYGLGV RYNPNIGKSK TYPFNIFRCR LGYREHNINS HIPLLSHLSC  180
QNTDVFSKNL ISNLEGSIHM IKEEQGRKQE QAETDTCKDT EIDLSLKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009130624.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893620.0AC189362.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB045I17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009130624.11e-170PREDICTED: zinc finger protein 1-like
TrEMBLA0A397ZYA21e-168A0A397ZYA2_BRACM; Uncharacterized protein
TrEMBLM4CN771e-168M4CN77_BRARP; Uncharacterized protein
STRINGBra005665.1-P1e-169(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87382636
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01860.18e-74C2H2 family protein