PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009130544.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family LBD
Protein Properties Length: 241aa    MW: 25985.2 Da    PI: 8.2144
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009130544.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260100.61.5e-312103197
          DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                     +C++C+vlr++C+++C+l+p++     +++q +++ +v+k+FG++ ++++++a+pe +r+++++sl+yeA+ r+ +Pv+Ga+g++++++++++q+
  XP_009130544.1   2 SCNGCRVLRKGCSENCILRPCIqwietADAQGHATVFVAKFFGRAGLMSFISAVPEPQRPALFQSLLYEACGRTVNPVNGAIGMLWTGNWNICQA 96 
                     6*********************9998666789*************************************************************** PP

          DUF260  91 kaelall 97 
                     ++e++l+
  XP_009130544.1  97 AVETVLR 103
                     *999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089120.5151107IPR004883Lateral organ boundaries, LOB
PfamPF031953.1E-262101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSENCILR PCIQWIETAD AQGHATVFVA KFFGRAGLMS FISAVPEPQR  60
PALFQSLLYE ACGRTVNPVN GAIGMLWTGN WNICQAAVET VLRGGSLRPI PELLAHGGGF  120
AGFPSEEGSE ICTGMLNLND GSSDRNIYHH SRFSSSRSRS TLDSSAKKRK RVDSSELDLS  180
LNPNLSTKTT PSPTRQRSGT PSMNSEESVA TTTSFWDATA TGERYGNGGG GETRQLLNLF  240
V
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.240220.0leaf| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009130544.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892580.0AC189258.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB021J09, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009130544.11e-179PREDICTED: LOB domain-containing protein 37-like
RefseqXP_013701885.11e-179LOB domain-containing protein 37-like
SwissprotQ9FN111e-121LBD37_ARATH; LOB domain-containing protein 37
TrEMBLA0A291LR211e-178A0A291LR21_BRARR; Transcription factor LBD37a
TrEMBLA0A398AGT51e-178A0A398AGT5_BRACM; Uncharacterized protein
TrEMBLM4ESQ31e-178M4ESQ3_BRARP; Uncharacterized protein
STRINGBra031833.1-P1e-178(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM82128122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67420.11e-114LOB domain-containing protein 37
Publications ? help Back to Top
  1. Menz J,Li Z,Schulze WX,Ludewig U
    Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.
    Plant J., 2016. 88(5): p. 717-734
    [PMID:27419465]