PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_009130527.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 371aa MW: 41669.5 Da PI: 6.3129 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.3 | 4.8e-15 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l+d+++ G+g +W + ++++g++R++k+c++rw++yl XP_009130527.1 14 KGPWSPEEDAKLKDYIESSGTGgNWIALPQKIGLRRCGKSCRLRWLNYL 62 79*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 38.5 | 2.7e-12 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +++eEd ++ ++ G++ W+ Ia+ ++ gRt++++k++w++ XP_009130527.1 69 GGFSEEEDNIICNLYVTIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 569******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.88 | 9 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 9.8E-26 | 11 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.8E-11 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.6E-14 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-23 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.42E-8 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 21.385 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 2.2E-11 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.5E-11 | 69 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-23 | 70 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.65E-8 | 71 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 371 aa Download sequence Send to blast |
MGRAPCCDKA NVKKGPWSPE EDAKLKDYIE SSGTGGNWIA LPQKIGLRRC GKSCRLRWLN 60 YLRPNIKHGG FSEEEDNIIC NLYVTIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLLNK 120 QRKEFQEARM KQEMVMMKRQ QQGQGQCQSN GSTDLYLNNM FRSSPWPLLP HLPPPHSQVP 180 LVMMEPTSCN YYQPTPSCAL EQKPLIPLKN MVKIEAEPER SNPDHHYPED SMTNSFDLSF 240 SQLLLDPNYY LESGGGEGEF ALMSSSTNSP LPNTSSDHHQ HQKEITQWFG SSNFQTEAIN 300 DVFLNNNNLA NFETNDENAK LYANSSVAGA GAAFAGGTTS TSADQSTISW EDITSLVNSD 360 DARYFNGPNN V |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 6e-24 | 14 | 117 | 7 | 108 | B-MYB |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Accumulates in an adaxial ball-shaped set of cells in three to five cell layers around the L3 layer of the shoot apical meristem (SAM) in youg plantlets. In the inflorescence meristem, confined to the axils of flower primordia. {ECO:0000269|PubMed:16461581}. | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:16461581}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_009130527.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HQ202285 | 0.0 | HQ202285.1 Brassica oleracea var. botrytis MYB-like protein gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009130527.1 | 0.0 | PREDICTED: transcription factor RAX3-like | ||||
Refseq | XP_013722417.1 | 0.0 | transcription factor RAX3-like | ||||
Swissprot | Q9M2Y9 | 1e-127 | RAX3_ARATH; Transcription factor RAX3 | ||||
TrEMBL | M4ESR7 | 0.0 | M4ESR7_BRARP; Uncharacterized protein | ||||
STRING | Bra031847.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2941 | 25 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G65790.1 | 1e-162 | myb domain protein 68 |
Publications ? help Back to Top | |||
---|---|---|---|
|