PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009130518.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Dof

Protein Properties

Length: 345aa MW: 39029.6 Da PI: 8.5521

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009130518.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.4	7.6e-39	74	133	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +++lkcprC+s+ntkfCyynnyslsqPr+fCk+CrryWt+GG+lrnvP+Ggg+rk kks XP_009130518.1 74 DQQTLKCPRCNSSNTKFCYYNNYSLSQPRHFCKSCRRYWTRGGSLRNVPIGGGCRKTKKS 133 57899****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-33	61	132	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	5.7E-33	76	132	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.478	78	132	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	80	116	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence Send to blast
MQNHFIYKFT PDETLFTNCS SISLALIILF LFLYFSRPII IMSSHTNLHS PKPDHRITGA 60 SHTKKPPSST ASQDQQTLKC PRCNSSNTKF CYYNNYSLSQ PRHFCKSCRR YWTRGGSLRN 120 VPIGGGCRKT KKSIKPNIIA PSSSSSQRFF SSTMEEASKF FTPPTAMDFQ LAGLSLNKIN 180 DLQLMNNQEV LGLRTTMEQV ETTPVDVGSG LTLMGFGDYN SNNNNHSPAT FTTDGNLATS 240 IETLSCLNQD LHWRLQQQRM AMFFGNSKEE TVVVERPQPL LYRNLEIVNS SPSPTTKKGE 300 NQTEWYFGNN NDNERVINNN ENNNTGGSDQ WNNGLQAWTD LNHYN

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence Send to blast

MQNHFIYKFT PDETLFTNCS SISLALIILF LFLYFSRPII IMSSHTNLHS PKPDHRITGA  60
SHTKKPPSST ASQDQQTLKC PRCNSSNTKF CYYNNYSLSQ PRHFCKSCRR YWTRGGSLRN  120
VPIGGGCRKT KKSIKPNIIA PSSSSSQRFF SSTMEEASKF FTPPTAMDFQ LAGLSLNKIN  180
DLQLMNNQEV LGLRTTMEQV ETTPVDVGSG LTLMGFGDYN SNNNNHSPAT FTTDGNLATS  240
IETLSCLNQD LHWRLQQQRM AMFFGNSKEE TVVVERPQPL LYRNLEIVNS SPSPTTKKGE  300
NQTEWYFGNN NDNERVINNN ENNNTGGSDQ WNNGLQAWTD LNHYN

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009130518.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009130518.1	0.0	PREDICTED: dof zinc finger protein DOF5.7-like
Swissprot	Q9LSL6	1e-167	DOF57_ARATH; Dof zinc finger protein DOF5.7
TrEMBL	M4ESS3	0.0	M4ESS3_BRARP; Uncharacterized protein
STRING	Bra031853.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4950	28	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65590.1	1e-159	Dof family protein

Publications ? help Back to Top
Castorina G,Fox S,Tonelli C,Galbiati M,Conti L A novel role for STOMATAL CARPENTER 1 in stomata patterning. BMC Plant Biol., 2016. 16(1): p. 172 [PMID:27484174]