PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009130511.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ZF-HD
Protein Properties Length: 272aa    MW: 30409.9 Da    PI: 7.0186
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009130511.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer99.72.1e-3165118357
     ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 
                     ++r++eClkN+A+++GghavDGCgEfmp+ g egt++alkCaACgCHRnFHR+e+
  XP_009130511.1  65 RFRFRECLKNQAVNIGGHAVDGCGEFMPA-GIEGTIEALKCAACGCHRNFHRKES 118
                     689*************************9.999********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047701.9E-2866118IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.1E-2867117IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152325.4568117IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257745.0E-2370117IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.603.3E-30169244IPR009057Homeodomain-like
SuperFamilySSF466896.65E-18173244IPR009057Homeodomain-like
TIGRFAMsTIGR015651.6E-26183239IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010371Biological Processregulation of gibberellin biosynthetic process
GO:0010431Biological Processseed maturation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MDFEEEINLH EEEEEDALYD SPPLPPPSRV LKASTESPDT AGTTSTGEGG FMVVHGGSSL  60
GGGGRFRFRE CLKNQAVNIG GHAVDGCGEF MPAGIEGTIE ALKCAACGCH RNFHRKESLY  120
FHHHHAPPQQ QHHPPPPGFY RLPAPVSYRP PPSQAPPLQL ALPQRERSED RMETSSAEAG  180
GIRKRFRTKF TAEQKERMLG LAERIGWRIQ RQDDEVIQRF CQETGVPRQV LKVWLHNNKH  240
TLGKSSSPPL HHHQNPTLPP QSSSFHHEQD QP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh5_A9e-351822411675ZF-HD homeobox family protein
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.65090.0bud
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in flowers and inflorescence. {ECO:0000269|PubMed:16428600}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00588DAPTransfer from AT5G65410Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009130511.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3534950.0AK353495.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-46-M17.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009130511.10.0PREDICTED: zinc-finger homeodomain protein 1-like
RefseqXP_013722360.10.0zinc-finger homeodomain protein 1
SwissprotQ9FKP81e-122ZHD1_ARATH; Zinc-finger homeodomain protein 1
TrEMBLA0A078HIY50.0A0A078HIY5_BRANA; BnaAnng04880D protein
TrEMBLM4ESS90.0M4ESS9_BRARP; Uncharacterized protein
STRINGBra031859.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM132371728
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65410.11e-107homeobox protein 25
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Bueso E,Serrano R,Pallás V,Sánchez-Navarro JA
    Seed tolerance to deterioration in arabidopsis is affected by virus infection.
    Plant Physiol. Biochem., 2017. 116: p. 1-8
    [PMID:28477474]