PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_009130508.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 331aa MW: 37756 Da PI: 9.8261 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 74.1 | 1.1e-23 | 6 | 55 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +++++s + +++s+R+++i+KKA+ELS+LC++ v+vi+++++g l+++++ XP_009130508.1 6 SSSSNSLAATSLSNRLKTIFKKASELSILCQVAVSVIYYGPNGDLKTWPK 55 78999*******************************************96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 0.0012 | 4 | 56 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.22E-13 | 15 | 84 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 10.414 | 15 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 8.7E-13 | 15 | 53 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 331 aa Download sequence Send to blast |
MRASSSSSSN SLAATSLSNR LKTIFKKASE LSILCQVAVS VIYYGPNGDL KTWPKEKEVV 60 KDMALRYKVA TKRKKSSNLR DFLEGKLEND KNLKKNKKKT KREFENVKYP DCYPVLDHYS 120 PDQLHELVLS LQGTLSTMEE RIRVLEAKKQ RNTNLVHQTV QPSNPSKCSL YLYNHDDATL 180 SQLPLSASHS NQLINYQNHL RMQQQRLYDP CVSTTQGHPA LLSVQESRLK NQLMQQQEAY 240 GSHHNVRMMN NTTNSKVLGH PCPLKTIPKE FSFDLQKNPN DDMVGRPKYS QDFPNLFLAY 300 ADIPQLQTSS LPSIHQTIPN INLIPDNSRC P |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 93 | 101 | KKNKKKTKR |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_009130508.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009130508.1 | 0.0 | PREDICTED: agamous-like MADS-box protein AGL75 | ||||
Refseq | XP_022565274.1 | 0.0 | agamous-like MADS-box protein AGL75 | ||||
TrEMBL | M4EST4 | 0.0 | M4EST4_BRARP; Uncharacterized protein | ||||
STRING | Bra031864.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM566 | 20 | 126 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G65330.1 | 5e-91 | AGAMOUS-like 78 |