PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009130475.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

WRKY

Protein Properties

Length: 197aa MW: 22203.5 Da PI: 7.5387

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009130475.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	87.8	9.4e-28	107	165	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +dDgy+WrKYG+K+vk++++ r+YY+C+s+gC+vkk+ver+ e+ +v++tYeg Hnhe XP_009130475.1 107 MDDGYKWRKYGKKSVKNNTNKRNYYKCSSEGCMVKKRVERDGENAAYVITTYEGVHNHE 165 59********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	3.3E-30	94	167	IPR003657	WRKY domain
SuperFamily	SSF118290	1.96E-26	99	167	IPR003657	WRKY domain
PROSITE profile	PS50811	28.839	102	167	IPR003657	WRKY domain
SMART	SM00774	1.5E-31	107	166	IPR003657	WRKY domain
Pfam	PF03106	4.0E-22	108	165	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 197 aa Download sequence Send to blast
MNPSQSPSPN FTFLSDENSI YSVMDNYDFS NLMFSVGEGG SNGLIQEETS SPTTIVTGES 60 GGSGSAFTTL RKKESTLDCK NRGSKDGETK EMGHRVAIRT RSKIDVMDDG YKWRKYGKKS 120 VKNNTNKRNY YKCSSEGCMV KKRVERDGEN AAYVITTYEG VHNHESPSHV YYSDMVFDHD 180 NWKQHSLLQS IQTFPPC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	1e-23	97	168	7	78	Probable WRKY transcription factor 4
2lex_A	1e-23	97	168	7	78	Probable WRKY transcription factor 4
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Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bra.28829	1e-110	leaf

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Involved in defense responses. May act as positive regulator of salicylic acid (SA)-mediated signaling and negative regulator of jasmonic acid (JA)-mediated signaling (PubMed:21030507). {ECO:0000250, ECO:0000269\|PubMed:21030507}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009130475.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF430060	0.0	KF430060.1 Brassica rapa WRKY transcription factor 51 (WRKY51) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009130475.1	1e-147	PREDICTED: probable WRKY transcription factor 51 isoform X1
Swissprot	Q93WU9	5e-98	WRK51_ARATH; Probable WRKY transcription factor 51
TrEMBL	A0A078H0L5	1e-146	A0A078H0L5_BRANA; BnaA02g34400D protein
TrEMBL	M4ESX0	1e-146	M4ESX0_BRARP; Uncharacterized protein
STRING	Bra031900.1-P	1e-147	(Brassica rapa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64810.1	1e-100	WRKY DNA-binding protein 51

Publications ? help Back to Top
Yan C, et al. Injury Activates Ca2+/Calmodulin-Dependent Phosphorylation of JAV1-JAZ8-WRKY51 Complex for Jasmonate Biosynthesis. Mol. Cell, 2018. 70(1): p. 136-149.e7 [PMID:29625034]