PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009130314.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HSF
Protein Properties Length: 306aa    MW: 33702.2 Da    PI: 6.2311
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009130314.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind56.29.5e-18371292102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     F   lye+++d+++++++sws++g+sf+ +d+++f ++vLpk+   ++ + FvR  ++Y F+kv+++e+         e++h++F +gk el  +
  XP_009130314.1  37 FADVLYEMVDDPSTDSIVSWSQDGKSFIFWDQDKFCSDVLPKFGLSTSPTFFVRLTDIYCFRKVEESEH--------CEYAHDYFVRGKPELTVE 123
                     77889*************************************9999*******************9995........6***************** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     i+r+ +
  XP_009130314.1 124 IERQFK 129
                     **9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.2E-2033127IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.1E-1837127IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.8E-73760IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.102.6E-2237127IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.74E-1737126IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000564.8E-788100IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF134568.8E-10156275No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MDSSSSSQGL PVAGGVKEYY RYPAMEAFHK GCVRRYFADV LYEMVDDPST DSIVSWSQDG  60
KSFIFWDQDK FCSDVLPKFG LSTSPTFFVR LTDIYCFRKV EESEHCEYAH DYFVRGKPEL  120
TVEIERQFKE SPIVSSISPV AVPVWSKPPA LALKCNIGAT WSATSPVSGA GWIIRDSVGK  180
VLSHSRRAFS GVVSSTQADL VALSWASAAV IELKLKNIMF EFSSVKAADA LNNPLEHPSS  240
YHLCHEVVNN VYSLAKSGLF LVSDNCNVAA SAIADSVTKD QRLQSYVAFG GPHCHWLSAV  300
LLQEAT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B6e-143712729129Heat shock factor protein 1
5d5v_B6e-143712729129Heat shock factor protein 1
5d5v_D6e-143712729129Heat shock factor protein 1
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009130314.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009130314.10.0PREDICTED: heat stress transcription factor B-2b-like
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18870.11e-17HSF family protein