PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009130305.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family G2-like
Protein Properties Length: 729aa    MW: 78457.6 Da    PI: 6.4271
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009130305.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like58.91e-1857107455
         G2-like   4 lrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     ++Wt+ L ++F  a+e++ G +kAtPk+il++m+ k+Lt++h++S LQkYR 
  XP_009130305.1  57 IKWTSALENEFFMAIEHI-GLHKATPKRILKFMDQKSLTRAHIASKLQKYRR 107
                     79****************.9*******************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.8E-1853111IPR009057Homeodomain-like
SuperFamilySSF466893.23E-1154111IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-1657107IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 729 aa     Download sequence    Send to blast
MWKHALDRRI NDGSIQDDTD GSIQDDTDGS EKIQEKTSSS DPCDGDSSLK KTKRVTIKWT  60
SALENEFFMA IEHIGLHKAT PKRILKFMDQ KSLTRAHIAS KLQKYRRNLK RDEDQRMKDR  120
IAMHSTFSSA DGYINPQHSY NYNTRLGNNN LFNVQPGYGL GQTSFMGNNN AGLHDSLNCM  180
NRRPTYDLSQ TGSKLLPMRG NLGFQNGMLP VKEEWRSIPG TSQAPRFGQY GTTSNALGMN  240
YNPTTGTMGS NNYVGIRGDE NGDLVGLGGL RVNGNGNGSF SGARVHGTGS GSLQGMSVYG  300
NGHGSSLGGR GVHGTGNGSL ERMRVPGNGH GTGNGSLGGI RVHGTGNGSL GGIRGPGTGN  360
GSLGGIRIHG NNNGIRIHDT SNGYGSFGGV KVHGTGNSNF SPDGIIVHGN SNSNDSLGGI  420
RVHGTDSVGG IRVHGTDAGS VVGGNVHGTS NGNGSLGVNF GMNCNFNNNN MSNHGSSTPM  480
FPSELSSFFG NKDQSQNNLI SQTGGVIPAL EKPKMFSDHH DINEVFSDTN NSQFHQNQHQ  540
GNLAGVNVGM NWNSNNNNMS NHGSSTPMFP SALSSFFGNK DQSQNNLVSQ TGGVIPALEK  600
PKIFSDHHDI NEVFSDTNNS QFHQNQHQGN LTGVNVEAPT AYPLEDISSW SFNDGTNNEE  660
MLDTLVANLE MYLPTQDMNI TNQGNNHEEM FNSLAANPEM HFPTQDMNIT NQDCDDEDFM  720
DYLIDPDMN
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009130305.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009130305.10.0PREDICTED: filaggrin-2
TrEMBLA0A078GW480.0A0A078GW48_BRANA; BnaA02g33170D protein
STRINGBo3g108010.11e-127(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1654279
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07210.14e-24response regulator 21