PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009130292.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MYB | ||||||||
Protein Properties | Length: 257aa MW: 28460.1 Da PI: 8.1268 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.7 | 5.6e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ +v+++G W+t +++ g++R++k+c++rw +yl XP_009130292.1 14 KGAWTPEEDQRLIAYVQLHGESGWRTLPEKAGLKRCGKSCRLRWANYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 45.9 | 1.3e-14 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg +T+eEd+ + ++++++G++ W++Ia + gRt++++k++w++ XP_009130292.1 67 RGEFTPEEDDTINKLHALMGNK-WAAIATSLA-GRTDNEIKNYWNTN 111 899*******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-23 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.953 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.99E-29 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.4E-12 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.0E-16 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.79E-10 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 23.617 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.7E-25 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.0E-14 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-13 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.87E-10 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MVRTPCCKEE GIRKGAWTPE EDQRLIAYVQ LHGESGWRTL PEKAGLKRCG KSCRLRWANY 60 LKPDIKRGEF TPEEDDTINK LHALMGNKWA AIATSLAGRT DNEIKNYWNT NLKKRLTQKG 120 LDPTTHKPIN PTDQTGFEPK VHKLGSSGCA RLLNHVARKY AGDLNRDLLT GIIIGNSSNI 180 AEGSQNSVEV DSPTESLIFT LLNKAAARSS DVTSFLTNNM SSSPGLSNNC SFADNLDLFF 240 SNEVISDMSM NVDNQIS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-27 | 14 | 116 | 7 | 108 | B-MYB |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bra.31636 | 1e-170 | leaf| root| seed |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in trichomes. {ECO:0000269|PubMed:23115560}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in tryptophan gene activation and in indole-3-acetic acid (IAA) and indolic glucosinolates (IG) biosynthesis. Acts as a direct transcriptional activator of both Trp synthesis genes and Trp secondary metabolism genes. {ECO:0000269|PubMed:15579661, ECO:0000269|PubMed:23580754, ECO:0000269|PubMed:23943862, ECO:0000269|PubMed:9576939}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009130292.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by herbivory. {ECO:0000269|PubMed:23943862}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009130292.2 | 0.0 | PREDICTED: transcription factor MYB34-like | ||||
Swissprot | O64399 | 1e-128 | MYB34_ARATH; Transcription factor MYB34 | ||||
TrEMBL | M4EKN3 | 0.0 | M4EKN3_BRARP; Uncharacterized protein | ||||
STRING | Bra029350.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9331 | 16 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60890.1 | 1e-131 | myb domain protein 34 |