PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009130170.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MIKC_MADS
Protein Properties Length: 228aa    MW: 26711.8 Da    PI: 8.984
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009130170.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF92.81.6e-291969151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krien + rqvtfskRr+g++KKA+ELSvLCda+va i+fs++gklyey+s
  XP_009130170.1 19 KRIENLTSRQVTFSKRRKGLMKKAHELSVLCDAQVAAIVFSQKGKLYEYAS 69
                    79***********************************************86 PP

2K-box51.83.6e-1893186999
           K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkk...ekelqeenkaLrkkle 99 
                     ++e++ + l+ e++ + + ie Lqr  R+l+GedL+++s++eL+++  q+eksl+ +Rs+K +l  +++ +l+     ++el +e ++L++++e
  XP_009130170.1  93 QKEQQVQDLKDEITIMVNSIELLQRHCRRLMGEDLDTCSVEELKEITIQIEKSLTIVRSRKAKLNEDEVGKLKAEiagKRELLNERTRLHEMFE 186
                     78999******************************************************************99763335777788888887776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.9641171IPR002100Transcription factor, MADS-box
SMARTSM004321.4E-401170IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.45E-311382IPR002100Transcription factor, MADS-box
CDDcd002653.72E-391378No hitNo description
PRINTSPR004041.1E-291333IPR002100Transcription factor, MADS-box
PfamPF003197.7E-262067IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-293348IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-294869IPR002100Transcription factor, MADS-box
PfamPF014865.3E-1894185IPR002487Transcription factor, K-box
PROSITE profilePS5129711.38698191IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MDSPTNHGRR MVKGKIEIKR IENLTSRQVT FSKRRKGLMK KAHELSVLCD AQVAAIVFSQ  60
KGKLYEYASS DMKKMIERCE LHRREYFHEE RLQKEQQVQD LKDEITIMVN SIELLQRHCR  120
RLMGEDLDTC SVEELKEITI QIEKSLTIVR SRKAKLNEDE VGKLKAEIAG KRELLNERTR  180
LHEMFEEKPL WMQSRNLESE KNASSSGCEN IHISNVETDL FIGLPRRV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A6e-191176166MEF2C
5f28_B6e-191176166MEF2C
5f28_C6e-191176166MEF2C
5f28_D6e-191176166MEF2C
6byy_A5e-191176166MEF2 CHIMERA
6byy_B5e-191176166MEF2 CHIMERA
6byy_C5e-191176166MEF2 CHIMERA
6byy_D5e-191176166MEF2 CHIMERA
6bz1_A6e-191176166MEF2 CHIMERA
6bz1_B6e-191176166MEF2 CHIMERA
6bz1_C6e-191176166MEF2 CHIMERA
6bz1_D6e-191176166MEF2 CHIMERA
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in the shoot apical meristem (SAM) during the vegetative phase and the floral transition. After floral transition, expressed in apical meristem (AM), inflorescence meristem (IM) and floral primordia. {ECO:0000269|PubMed:21609362}.
Functional Description ? help Back to Top
Source Description
UniProtMADS-box transcription factor that acts with AGL42 and AGL72 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1. {ECO:0000269|PubMed:21609362}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009130170.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2325421e-114AC232542.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH005L20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009130170.11e-167PREDICTED: MADS-box protein AGL71-like
RefseqXP_013675386.11e-167MADS-box protein AGL71
SwissprotQ9LT932e-71AGL71_ARATH; MADS-box protein AGL71
TrEMBLA0A078HZW31e-165A0A078HZW3_BRANA; BnaAnng06990D protein
TrEMBLA0A3P6B9711e-165A0A3P6B971_BRACM; Uncharacterized protein
STRINGBo2g161560.11e-153(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM88051235
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51860.29e-77MIKC_MADS family protein