PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009130136.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Dof
Protein Properties Length: 286aa    MW: 30960.7 Da    PI: 6.986
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009130136.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof118.23.2e-374299461
          zf-Dof  4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
                    ++lkcprC+s nt fCyynny+lsqPr+fCk+CrryWtkGG lrnvPvGgg+rk k+s
  XP_009130136.1 42 HHLKCPRCNSLNTNFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKAKRS 99
                    5789***************************************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074783.0E-323398IPR003851Zinc finger, Dof-type
PfamPF027016.0E-324298IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.0874498IPR003851Zinc finger, Dof-type
PROSITE patternPS0136104682IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MQDIHDYSMT GGGGGGSTGR FYGGGGGGDR RMRAHQNNIL NHHLKCPRCN SLNTNFCYYN  60
NYNLSQPRHF CKNCRRYWTK GGVLRNVPVG GGCRKAKRSK PKQDQPPSSA DKPTTQDVEE  120
KSSSSESSSL TASNFTTTAA AVKVASSGFM GTDMPNNIKQ YGNDVVWSTL FGQGSLDGGV  180
FSETNGFAAA STIETTPFEY GGSSVNQQCI GDHLKFAGNT VQQQFGDRTA QVDPNMGFES  240
LNWGSGGGDD QTLFDLTSTV DHSYWSQSQW TSSSDHQDDQ NGLHLP
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009130136.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3531381e-102AK353138.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-17-G03.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009130136.10.0PREDICTED: dof zinc finger protein DOF5.4-like
SwissprotQ8LDR01e-116DOF54_ARATH; Dof zinc finger protein DOF5.4
TrEMBLA0A3P6AY940.0A0A3P6AY94_BRACM; Uncharacterized protein
STRINGBra029352.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44822656
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60850.11e-102OBF binding protein 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Xu P,Chen H,Ying L,Cai W
    AtDOF5.4/OBP4, a DOF Transcription Factor Gene that Negatively Regulates Cell Cycle Progression and Cell Expansion in Arabidopsis thaliana.
    Sci Rep, 2016. 6: p. 27705
    [PMID:27297966]
  3. Ramirez-Parra E, et al.
    The transcription factor OBP4 controls root growth and promotes callus formation.
    New Phytol., 2017. 213(4): p. 1787-1801
    [PMID:27859363]
  4. Rymen B, et al.
    ABA Suppresses Root Hair Growth via the OBP4 Transcriptional Regulator.
    Plant Physiol., 2017. 173(3): p. 1750-1762
    [PMID:28167701]