PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009130134.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 458aa MW: 51663.3 Da PI: 7.3746

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009130134.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	54.8	1.7e-17	234	283	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR++iN++f++Lr+l+P++ ++K +Ka+ L ++++YI+ Lq XP_009130134.1 234 RSKHSATEQRRRSKINDRFQTLRQLIPNS----DQKRDKASFLLEVIQYIHFLQ 283 889***********************9....9****************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	9.6E-22	229	290	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.44E-18	230	291	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.18	232	282	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.9E-15	234	283	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.64E-14	234	286	No hit	No description
SMART	SM00353	1.1E-13	238	288	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 458 aa Download sequence Send to blast
MEFPHSRVFE AQGRKKPTHD FLSACSNSNV HPADPMPSSQ GGYPKTHDFL QPFEHVGTRA 60 SAKEEGTRGS DDTTVASSEL KSPYVHNQHV LPGGIGTYTI SQMPYLNHNH LQRVPKPKVS 120 PMFTVSQASC NERNAVEDNS VSNCSSYAAK NGFTLWNESI EKKGHTRKRQ SQSFIDMIKS 180 AKGSSQEDDM DDDDEEFVTN KGSNTSTSQS QRVDLRVKVD KKGHGNEQKP NTPRSKHSAT 240 EQRRRSKIND RFQTLRQLIP NSDQKRDKAS FLLEVIQYIH FLQEKVDKHE PPEGTVPVLA 300 EAQAVDMEHQ QCLKRAMDTT SFPVLGQRNS FFSPELSQLC PVSSSDVAAM ECENLREEEE 360 VEELSIHKGT INISSVYSQG LLKTLSETLQ TSGVDLSRSR ISVQIKLSKQ PQEEEEVHRK 420 VRPHLQSGDE NHNDDENNNI KQSRAQKKLK KHHSIRNI

Sequence ? help Back to Top

Protein Sequence Length: 458 aa Download sequence Send to blast

MEFPHSRVFE AQGRKKPTHD FLSACSNSNV HPADPMPSSQ GGYPKTHDFL QPFEHVGTRA  60
SAKEEGTRGS DDTTVASSEL KSPYVHNQHV LPGGIGTYTI SQMPYLNHNH LQRVPKPKVS  120
PMFTVSQASC NERNAVEDNS VSNCSSYAAK NGFTLWNESI EKKGHTRKRQ SQSFIDMIKS  180
AKGSSQEDDM DDDDEEFVTN KGSNTSTSQS QRVDLRVKVD KKGHGNEQKP NTPRSKHSAT  240
EQRRRSKIND RFQTLRQLIP NSDQKRDKAS FLLEVIQYIH FLQEKVDKHE PPEGTVPVLA  300
EAQAVDMEHQ QCLKRAMDTT SFPVLGQRNS FFSPELSQLC PVSSSDVAAM ECENLREEEE  360
VEELSIHKGT INISSVYSQG LLKTLSETLQ TSGVDLSRSR ISVQIKLSKQ PQEEEEVHRK  420
VRPHLQSGDE NHNDDENNNI KQSRAQKKLK KHHSIRNI

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bra.18110	0.0	bud\| flower\| leaf

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed constitutively in roots. {ECO:0000269\|PubMed:12679534}.

Functional Description ? help Back to Top
Source	Description
UniProt	Positive brassinosteroid-signaling protein. Transcription factor that bind specifically to the DNA sequence 5'-CANNTG-3'(E box). Can bind individually to the promoter as a homodimer or synergistically as a heterodimer with BZR2/BES1. Does not itself activate transcription but enhances BZR2/BES1-mediated target gene activation. {ECO:0000269\|PubMed:15680330}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009130134.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by cold treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC149635	0.0	AC149635.1 Genomic sequence for broccoli [Brassica oleracea L. (Italica group)] BAC clone B19N3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009130134.1	0.0	PREDICTED: transcription factor BIM1-like
Refseq	XP_013700828.1	0.0	transcription factor BIM1-like isoform X1
Swissprot	Q9LEZ3	1e-121	BIM1_ARATH; Transcription factor BIM1
TrEMBL	A0A078I155	0.0	A0A078I155_BRANA; BnaAnng06580D protein
STRING	Bra029354.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM18805	7	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08130.4	1e-119	bHLH family protein

Publications ? help Back to Top
Liang T, et al. UVR8 Interacts with BES1 and BIM1 to Regulate Transcription and Photomorphogenesis in Arabidopsis. Dev. Cell, 2018. 44(4): p. 512-523.e5 [PMID:29398622]