PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009130104.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 317aa    MW: 35727.1 Da    PI: 8.6004
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009130104.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.32e-14115159347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+ E+ +++ + k++G+g+W++I+r++ ++Rt+ q+ s+ qky
   XP_009130104.1 115 PWTPLEHSQFLLGLKKYGKGDWRSISRHVVLTRTPTQVASHAQKY 159
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512936.606863IPR017884SANT domain
SMARTSM007174.7E-7961IPR001005SANT/Myb domain
CDDcd001674.41E-61259No hitNo description
SuperFamilySSF466891.29E-91267IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.8E-42360IPR009057Homeodomain-like
PROSITE profilePS5129416.232107164IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.5E-10108163IPR009057Homeodomain-like
SuperFamilySSF466897.11E-15109164IPR009057Homeodomain-like
TIGRFAMsTIGR015576.4E-14112162IPR006447Myb domain, plants
SMARTSM007172.8E-11112162IPR001005SANT/Myb domain
CDDcd001677.54E-10115160No hitNo description
PfamPF002491.1E-11115159IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MIISEKTGGG LSWSRDDNIA FERALVVYTD KTDNRWEKIA DSVPEKTLAQ VIEHYNSLLH  60
DITMIESGIV PLPDYNDVPI ETNVRERSIG ERSINRKCEY KQEDEPKPKR RKAVPWTPLE  120
HSQFLLGLKK YGKGDWRSIS RHVVLTRTPT QVASHAQKYF ARHRATNRSR QRHNIHDVNV  180
SESSNISAMK APITCQDAKA ASQPSVDHQA YETPAIWNTE ATSPTSLDHH VFGTPTIWNM  240
QAASHPSVNV PVYGAPTIGQ SMVGPYVLPY GTDMNLFAPP YMAYRAQHHS TPYSPVPSAP  300
FNTWTVPDNM TNIPTSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A7e-14875673RADIALIS
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009130104.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009130104.10.0PREDICTED: transcription factor DIVARICATA-like
TrEMBLM4EKR30.0M4EKR3_BRARP; Uncharacterized protein
STRINGBra029380.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23650.11e-105Homeodomain-like transcriptional regulator