PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009130066.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 402aa    MW: 45553.4 Da    PI: 10.3764
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009130066.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3604e-19221011198
                     HHTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3  11 lksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                     ++s+ l +p +f+++h +g k+e++t++l++  s r+W+vk+  ++++    lt+GWkeF+ka++L++gD+v+F+++g++ f  +v++f 
  XP_009130066.1  22 FQSH-LNIPVTFFSKHiEG-KHEGRTVKLRSdCSDRTWKVKI--EGHR----LTDGWKEFAKAHDLRVGDVVIFRHEGDMLF--HVTAFG 101
                     5555.99*********644.46778****997899*******..6666....***********************9999988..888776 PP
2B355.78.8e-18145238598
                     -..-HHHHTT-E...E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
              B3   5 ltpsdvlksgrl...vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                      +++++l++g +    +p +fa+++g++k + + + l++++g++We kl+ + +sg++++ ++W++F+ a +Lk gD++ Fkl + +++++v+++
  XP_009130066.1 145 SVTASNLSRGAVlmqGVPLDFARRNGLNKGR-RVIALRNQEGKTWESKLK-STRSGQVFICRNWRSFCTASKLKIGDSFQFKLLQ-NTETPVFQL 236
                     55555555544434478***********866.69***************5.55556788899********************999.666699999 PP

                     E- CS
              B3  97 fr 98 
                     ++
  XP_009130066.1 237 CS 238
                     97 PP
3B350.24.8e-16267362298
                     EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..E CS
              B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgr.sefelv 93 
                     +k++t++++l+ g   lp +f++ ++++k++  +++l d++  +W++kl+ + +sg+  ++ ++ Wk+F+ ang+ +g++++++l++r +   l+
  XP_009130066.1 267 VKITTTASSLEIGKQHLPVHFTRGNKLNKPG--KIVLVDKDKVEWSMKLNQDSRSGTmyIMGGTAWKSFCAANGVVVGESLTLELIRRgMI--LL 357
                     689999********************99776..7***************7755555554444588*********************96444..47 PP

                     EEEE- CS
              B3  94 vkvfr 98 
                     +k+++
  XP_009130066.1 358 LKFCS 362
                     77776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.0E-258104IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.51E-239109IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.59211103IPR003340B3 DNA binding domain
CDDcd100171.41E-1912100No hitNo description
SMARTSM010191.5E-2414103IPR003340B3 DNA binding domain
PfamPF023626.6E-132498IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.3E-19134237IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.02E-17137237IPR015300DNA-binding pseudobarrel domain
CDDcd100175.89E-16141238No hitNo description
SMARTSM010199.5E-22142240IPR003340B3 DNA binding domain
PfamPF023623.9E-17143238IPR003340B3 DNA binding domain
PROSITE profilePS5086312.52161240IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.6E-15261363IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.49E-15262367IPR015300DNA-binding pseudobarrel domain
CDDcd100173.88E-16264362No hitNo description
PfamPF023624.4E-15266363IPR003340B3 DNA binding domain
SMARTSM010191.7E-21266364IPR003340B3 DNA binding domain
PROSITE profilePS5086313.296266363IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MEKASLLTPA NPHFFQPLLT GFQSHLNIPV TFFSKHIEGK HEGRTVKLRS DCSDRTWKVK  60
IEGHRLTDGW KEFAKAHDLR VGDVVIFRHE GDMLFHVTAF GTSFCEIQYV LSGIHVKVKE  120
ESEEIGESSR REKESSSKPT CFSQSVTASN LSRGAVLMQG VPLDFARRNG LNKGRRVIAL  180
RNQEGKTWES KLKSTRSGQV FICRNWRSFC TASKLKIGDS FQFKLLQNTE TPVFQLCSLS  240
KVKPKKETLS ESEEDDVVDK TETPRYVKIT TTASSLEIGK QHLPVHFTRG NKLNKPGKIV  300
LVDKDKVEWS MKLNQDSRSG TMYIMGGTAW KSFCAANGVV VGESLTLELI RRGMILLLKF  360
CSKMEQPPFK TKARKHKRAR VQRLTRESRS EDDVSSQEGI VK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009130066.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892170.0AC189217.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB010F06, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013650511.10.0B3 domain-containing protein REM8-like
RefseqXP_018512638.10.0PREDICTED: B3 domain-containing protein REM8-like
SwissprotQ8H2D11e-151REM8_ARATH; B3 domain-containing protein REM8
TrEMBLA0A0D3A2T30.0A0A0D3A2T3_BRAOL; Uncharacterized protein
STRINGBo1g011080.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31680.11e-149B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]