PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009130047.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 388aa    MW: 44253.3 Da    PI: 6.3434
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009130047.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF57.51.8e-181053245
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                    +i nks r+ tf kR+ g++KKA+ELS+LC+++v+ +i s +++
  XP_009130047.1 10 FITNKSSRNQTFKKRKRGLMKKAKELSTLCGVKVCAVIKSCDNT 53
                    79************************************998886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006618.446161IPR002100Transcription factor, MADS-box
SMARTSM004321.0E-22160IPR002100Transcription factor, MADS-box
CDDcd002661.56E-23271No hitNo description
SuperFamilySSF554557.59E-21395IPR002100Transcription factor, MADS-box
PRINTSPR004045.7E-11323IPR002100Transcription factor, MADS-box
PfamPF003194.5E-181052IPR002100Transcription factor, MADS-box
PRINTSPR004045.7E-112338IPR002100Transcription factor, MADS-box
PRINTSPR004045.7E-113859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MKRGRLKLNF ITNKSSRNQT FKKRKRGLMK KAKELSTLCG VKVCAVIKSC DNTEPEFWPS  60
REGAEAVHLE FTNAVQRQGF SKIHNHESYL SERIQKDGEK ARRLHAENRE IELREVMFDL  120
LKGKTLMPHQ YGDPSFMREL NLFIGGYANR VTYRTQFLEG SVQHVPPNVG GADAPGPVVG  180
DVNPFVVGTE GSVINPTEAY DHMRQYDGMD MSVNDQAPDH VHHQNMNHQE PFQYQCPTNF  240
YDQTQPMFYG SSQGMNTNHH QEPIEYQTPN VYDQIQPMFT GSSQGMNMHY QEPFQYQPPG  300
NLYDQTQPMF YGSNKDMYTG LNYDQGQSSN QYLNQQMSDV QDLASVASMD QQLPVTSQMP  360
STITTTTAAA DLYGHSINNG WPTRFDLD
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009130047.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009130047.10.0PREDICTED: MADS-box transcription factor PHERES 1-like
TrEMBLA0A3P6B8750.0A0A3P6B875_BRACM; Uncharacterized protein
TrEMBLM4DVI00.0M4DVI0_BRARP; Uncharacterized protein
STRINGBra020524.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14795620
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65330.13e-34M-type_MADS family protein