PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009130046.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 395aa    MW: 44762.8 Da    PI: 5.5668
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009130046.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF50.91.9e-161153244
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                    +i+nks r+ tf kR  g +KKA+ELS+LC+++v+ +i s ++
  XP_009130046.1 11 FIDNKSARNQTFKKRTRGFMKKAKELSTLCGIKVSAVIKSCDN 53
                    8************************************999877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.6E-18261IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.764262IPR002100Transcription factor, MADS-box
CDDcd002661.63E-23386No hitNo description
SuperFamilySSF554553.27E-20395IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-9424IPR002100Transcription factor, MADS-box
PfamPF003199.2E-151153IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-92439IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-93960IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MSTRGRLKLN FIDNKSARNQ TFKKRTRGFM KKAKELSTLC GIKVSAVIKS CDNAEPEFWP  60
SREGAEAVHS EFMKVVETQG FSKMHNHESY LLERIQRDGE KARRLHAEAE NREIELREVM  120
FDLLKGKTLM PHQYGDPSFM RELNLFIGGY ANRVTYRTQF LEGSVEPVPP NFAGANAHGP  180
VVDDVNPVVV GTEGSVINPT EAYDHMPQYD GMDMSVNVEV PEPFQYQTNA NYYDQTQPWF  240
NGSSQGMNVN HQEPFQYQTP PNSYDHIQPM FNGSSQGMNM KYEEPFQYQP HGNLYDQMQP  300
MFYGSSQDMY TGLSHDQGQS SNTTQQFMSL LMGRPQQMSD VQDLASVASM DDNNNRYQQL  360
PVTSQMPSTT TTTTAAANLS GHSINNGWPT KFGLD
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009130046.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009130046.10.0PREDICTED: MADS-box transcription factor PHERES 1-like
TrEMBLM4DVI10.0M4DVI1_BRARP; Uncharacterized protein
STRINGBra020525.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14795620
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65330.18e-38M-type_MADS family protein