PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009130038.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 331aa    MW: 37303.4 Da    PI: 4.9009
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009130038.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF57.41.9e-18347549
                    SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    n++ r+ tf kR++g+lKKA+ELS+LC+++v+v+i s +++  e+
  XP_009130038.1  3 NSTARNQTFRKRKTGLLKKANELSTLCGVKVCVVINSCDNTETEF 47
                    8999*********************************99987776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006615.741151IPR002100Transcription factor, MADS-box
SMARTSM004323.0E-14150IPR002100Transcription factor, MADS-box
PfamPF003197.1E-18243IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.27E-19285IPR002100Transcription factor, MADS-box
CDDcd002663.43E-23273No hitNo description
PRINTSPR004042.3E-51328IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-52849IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MTNSTARNQT FRKRKTGLLK KANELSTLCG VKVCVVINSC DNTETEFWPS REDAEAVHSA  60
FMGVLPEERC KKMYDQERHL EERIQKGQAK AMRLQAENRE IELREVMFDL LKGETLKPHH  120
YDDPCFIGEL NHFIGDYVKN LSHRIEFLEA NGEPVPPNVA ATDASGPFVV GTEGLVSNPT  180
EAYDHMRQFD GMDMSVKEEA PGGFNDHVHH QNMNHQEPFQ YQTPANFDDQ TQPMFYGSNQ  240
DMYTGLNHDQ GQSSNQYPNS NQSFVGLLMG QPQQMSDGQD PATVASMDDK NNGYYQLPIT  300
SQMLLTTTTA AAADLSGHRI NNGWLTRFGL D
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009130038.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009130038.20.0PREDICTED: agamous-like MADS-box protein AGL92
TrEMBLM4DVK80.0M4DVK8_BRARP; Uncharacterized protein
STRINGBra020552.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14795620
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65330.12e-39M-type_MADS family protein