PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009129980.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 175aa    MW: 19814.4 Da    PI: 8.6332
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009129980.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.72.8e-18755254
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkle 54
                    +++GVr+++ +g+Wv+eIr+p        +r++lg+f tae+Aa+a+++a++ + 
  XP_009129980.1  7 RFRGVRQRH-WGSWVSEIRHP-----LlkTRIWLGTFETAEDAARAYDEAARLMC 55
                    69******9.**********8.....334**********************8775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.24E-35666No hitNo description
PfamPF008476.0E-11756IPR001471AP2/ERF domain
SMARTSM003806.4E-40770IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-21766IPR016177DNA-binding domain
PROSITE profilePS5103220.719764IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.1E-34764IPR001471AP2/ERF domain
PRINTSPR003678.9E-11819IPR001471AP2/ERF domain
PRINTSPR003678.9E-113046IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MARPQQRFRG VRQRHWGSWV SEIRHPLLKT RIWLGTFETA EDAARAYDEA ARLMCGPRAR  60
TNFPYNPNAI PSPSSKLLSA TLTAKLHKCY MASLQMTKQS QTQTQNTHSV KNVAFDGGNQ  120
YNTGGGVTEM KCEDGNANLK QNFRPLEEDH IEQMIEELLH YGSIEFCSVL PSQSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-17869668ATERF1
3gcc_A4e-17869668ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00526DAPTransfer from AT5G25190Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009129980.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0456591e-106AY045659.1 Arabidopsis thaliana AT5g25190/F21J6_103 mRNA, complete cds.
GenBankAY0596641e-106AY059664.1 Arabidopsis thaliana AT5g25190/F21J6_103 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009129980.11e-132PREDICTED: ethylene-responsive transcription factor ERF003-like
SwissprotQ94AW57e-97ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLA0A3P6B0D21e-131A0A3P6B0D2_BRACM; Uncharacterized protein
TrEMBLM4DVE61e-131M4DVE6_BRARP; Uncharacterized protein
STRINGBra020490.1-P1e-131(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.11e-87ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]