PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009129978.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TALE
Protein Properties Length: 420aa    MW: 46440.4 Da    PI: 5.7052
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009129978.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.59.8e-083573902154
                     HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     k +yp++e++++L +++gL+ +q+ +WF N+R +
  XP_009129978.1 357 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 390
                     469*****************************87 PP
2ELK28.82.7e-10311332122
             ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                     ELKh+L+++Y+++++++++E++
  XP_009129978.1 311 ELKHELKQGYKEKIVDIREEIL 332
                     9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012558.7E-20143187IPR005540KNOX1
PfamPF037909.2E-18146186IPR005540KNOX1
SMARTSM012566.4E-28199254IPR005541KNOX2
PfamPF037911.7E-20205253IPR005541KNOX2
SMARTSM011886.1E-4311332IPR005539ELK domain
PfamPF037899.7E-7311332IPR005539ELK domain
PROSITE profilePS512139.969311331IPR005539ELK domain
PROSITE profilePS5007111.726331394IPR001356Homeobox domain
SuperFamilySSF466893.85E-16333397IPR009057Homeodomain-like
SMARTSM003892.4E-11333398IPR001356Homeobox domain
CDDcd000862.05E-11334395No hitNo description
Gene3DG3DSA:1.10.10.603.6E-25338395IPR009057Homeodomain-like
PfamPF059201.2E-17351390IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MAFHHNHLSQ DLSFNHFTDQ DGPPLPPPQQ QQQQQHFHDA PPPNWLNTAL LRSDNNNNFL  60
NLHTSAANTT AATTSDSPSS AAANQWLSRS SSILQRTENN NSSGAAVVID EGGAETMIGG  120
ENKNDGGGEA AAAAEGVVSW QNARQKAEIL SHPLYEQLLS AHVACLRIAT PVDQLPRIDA  180
QLAQSQNVVA KYSALGAGQG LVGDDDKELD QFMTHYVLLL CSFKEQLQQH VRVHAMEAVM  240
ACWEIEQSLQ SLTGVSPGEG TGATMSDDED EQQVESDANM FDGGGGLDVL GFGPLVPTES  300
ERSLMERVRQ ELKHELKQGY KEKIVDIREE ILRKRRAGKL PGDTTSVLKA WWQSHSKWPY  360
PTEEDKARLV QETGLQLKQI NNWFINQRKR NWHSNPSSSP VLKNKRKNNA GDSSGRERFT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A2e-12334398872Homeobox protein PKNOX1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.204301e-180bud
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009129978.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3529660.0AK352966.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-12-H10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009129978.10.0PREDICTED: homeobox protein knotted-1-like 3 isoform X1
SwissprotP480000.0KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBLA0A3P6AXQ20.0A0A3P6AXQ2_BRACM; Uncharacterized protein
STRINGBra020491.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44428158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.10.0KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]