PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009129961.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Protein Properties

Length: 271aa MW: 31143.7 Da PI: 8.4548

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009129961.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	37.8	3.4e-12	31	111	12	97
HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 ++++ ++p +f+++ g + l++ ++g+sW+v l ++ +++ ++ ++ W eFv++n L+ +D+++F++++++ + v+++ XP_009129961.1 31 SKSMRIIPEEFVRSAHGA--FEHRLVFSVSWGNSWQVWL--QRDKNGlFMEEEDWDEFVDDNLLCPNDILLFTHEDTMFT--EVRIY 111 456789****999655..3446***********..88887879999*******************8876665..55555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	1.16E-13	16	114	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	5.0E-13	16	114	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.94E-11	17	112	No hit	No description
SMART	SM01019	3.6E-13	19	114	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	10.969	20	114	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.9E-9	31	105	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	2.75E-5	171	258	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	5.8E-4	172	261	IPR015300	DNA-binding pseudobarrel domain
SMART	SM01019	0.012	178	270	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 271 aa Download sequence Send to blast
MTLNGVLDLL QENVKKPRFC KSLPLGENWK SKSMRIIPEE FVRSAHGAFE HRLVFSVSWG 60 NSWQVWLQRD KNGLFMEEED WDEFVDDNLL CPNDILLFTH EDTMFTEVRI YKKDYRFFKQ 120 VITAPLPPQV LNPKPNAPSS APPGFAPFAS ASASRARQSS SPVQNPEQYL VNPQNPYFVK 180 TLSKKIDVLY VNQEVIQRYG LKFGPHLSPV HYLLPGEKHE AVIKIYRNAP CFNRWAAICK 240 KYNKKEGDSV VCELERSGGV VTAVRVHFVD E

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009129961.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189520	0.0	AC189520.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB091J13, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009129961.1	0.0	PREDICTED: B3 domain-containing protein At5g25470-like
Swissprot	Q1PDT6	1e-98	Y5547_ARATH; B3 domain-containing protein At5g25470
TrEMBL	M4DVF7	0.0	M4DVF7_BRARP; Uncharacterized protein
STRING	Bra020501.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4491	16	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G25470.2	2e-98	B3 family protein

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]